membrane simulations
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scholarly journals LiPyphilic: A Python Toolkit for the Analysis of Lipid Membrane Simulations

2021 ◽  
Author(s):  
Paul Smith ◽  
Christian D. Lorenz
Keyword(s):  
Lipid Membrane ◽  
Membrane Simulations

scholarly journals Dual Resolution Membrane Simulations Using Virtual Sites

2020 ◽  
Vol 124 (19) ◽  
pp. 3944-3953 ◽  
Author(s):  
Yang Liu ◽  
Alex H. De Vries ◽  
Jonathan Barnoud ◽  
Weria Pezeshkian ◽  
Josef Melcr ◽  
...  
Keyword(s):  
Membrane Simulations

scholarly journals Curvature as a Collective Coordinate in Enhanced Sampling Membrane Simulations

2019 ◽  
Vol 15 (12) ◽  
pp. 6551-6561 ◽  
Author(s):  
Benjamin Bouvier
Keyword(s):  
Enhanced Sampling ◽  
Collective Coordinate ◽  
Membrane Simulations

Single-Nanometer Changes in Nanopore Geometry Influence Curvature, Local Properties, and Protein Localization in Membrane Simulations

Nano Letters ◽  
2019 ◽  
Vol 19 (7) ◽  
pp. 4770-4778 ◽  
Author(s):  
Alexis Belessiotis-Richards ◽  
Stuart G. Higgins ◽  
Ben Butterworth ◽  
Molly M. Stevens ◽  
Alfredo Alexander-Katz
Keyword(s):  
Protein Localization ◽  
Local Properties ◽  
Membrane Simulations

scholarly journals Accelerating Membrane Simulations with Hydrogen Mass Repartitioning

2019 ◽  
Vol 15 (8) ◽  
pp. 4673-4686 ◽  
Author(s):  
Curtis Balusek ◽  
Hyea Hwang ◽  
Chun Hon Lau ◽  
Karl Lundquist ◽  
Anthony Hazel ◽  
...  
Keyword(s):  
Hydrogen Mass ◽  
Membrane Simulations

scholarly journals Detachment of a fluid membrane from a substrate and vesiculation

Soft Matter ◽  
2019 ◽  
Vol 15 (43) ◽  
pp. 8741-8748 ◽  
Author(s):  
Hiroshi Noguchi
Keyword(s):  
Spontaneous Curvature ◽  
Flat Substrate ◽  
Fluid Membrane ◽  
Membrane Simulations

The detachment dynamics of a fluid membrane with isotropic spontaneous curvature from a flat substrate are studied by using meshless membrane simulations.

scholarly journals CHARMM-GUIMembrane Builderfor Complex Biological Membrane Simulations with Glycolipids and Lipoglycans

2018 ◽  
Vol 15 (1) ◽  
pp. 775-786 ◽  
Author(s):  
Jumin Lee ◽  
Dhilon S. Patel ◽  
Jonas Ståhle ◽  
Sang-Jun Park ◽  
Nathan R. Kern ◽  
...  
Keyword(s):  
Biological Membrane ◽  
Membrane Simulations

scholarly journals Hydrodynamics of Diffusion in Lipid Membrane Simulations

2018 ◽  
Vol 120 (26) ◽  
Author(s):  
Martin Vögele ◽  
Jürgen Köfinger ◽  
Gerhard Hummer
Keyword(s):  
Lipid Membrane ◽  
Membrane Simulations

Testing the limits of model membrane simulations-bilayer composition and pressure scaling

2017 ◽  
Vol 39 (8) ◽  
pp. 387-396 ◽  
Author(s):  
Nikoleta Ivanova ◽  
Anela Ivanova
Keyword(s):  
Model Membrane ◽  
Membrane Simulations

Lennard-Jones type pair-potential method for coarse-grained lipid bilayer membrane simulations in LAMMPS

2017 ◽  
Vol 210 ◽  
pp. 193-203 ◽  
Author(s):  
S.-P. Fu ◽  
Z. Peng ◽  
H. Yuan ◽  
R. Kfoury ◽  
Y.-N. Young
Keyword(s):  
Lipid Bilayer ◽  
Pair Potential ◽  
Potential Method ◽  
Bilayer Membrane ◽  
Lipid Bilayer Membrane ◽  
Coarse Grained ◽  
Lennard Jones ◽  
Membrane Simulations
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