Methods in Molecular Biology - Biomolecular Simulations
Latest Publications

TOTAL DOCUMENTS

(FIVE YEARS 21)

H-INDEX

(FIVE YEARS 4)

Published By Springer New York

9781493996070, 9781493996087

Latest Documents Most Cited Documents Contributed Authors Related Sources Related Keywords

Quantum Chemical and QM/MM Models in Biochemistry

Methods in Molecular Biology - Biomolecular Simulations ◽

10.1007/978-1-4939-9608-7_4 ◽

2019 ◽

pp. 75-104

Author(s):

Patricia Saura ◽

Michael Röpke ◽

Ana P. Gamiz-Hernandez ◽

Ville R. I. Kaila

Keyword(s):

Quantum Chemical

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Improvement of RNA Simulations with Torsional Revisions of the AMBER Force Field

Methods in Molecular Biology - Biomolecular Simulations ◽

10.1007/978-1-4939-9608-7_3 ◽

2019 ◽

pp. 55-74 ◽

Cited By ~ 1

Author(s):

Ilyas Yildirim

Keyword(s):

Force Field ◽

Amber Force Field

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The Adaptive Path Collective Variable: A Versatile Biasing Approach to Compute the Average Transition Path and Free Energy of Molecular Transitions

Methods in Molecular Biology - Biomolecular Simulations ◽

10.1007/978-1-4939-9608-7_11 ◽

2019 ◽

pp. 255-290

Author(s):

Alberto Pérez de Alba Ortíz ◽

Jocelyne Vreede ◽

Bernd Ensing

Keyword(s):

Free Energy ◽

Collective Variable ◽

Transition Path ◽

Average Transition

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Protein–Ligand Binding Free Energy Calculations with FEP+

Methods in Molecular Biology - Biomolecular Simulations ◽

10.1007/978-1-4939-9608-7_9 ◽

2019 ◽

pp. 201-232 ◽

Cited By ~ 3

Author(s):

Lingle Wang ◽

Jennifer Chambers ◽

Robert Abel

Keyword(s):

Free Energy ◽

Ligand Binding ◽

Binding Free Energy ◽

Free Energy Calculations ◽

Energy Calculations ◽

Binding Free Energy Calculations

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A Practical View of the Martini Force Field

Methods in Molecular Biology - Biomolecular Simulations ◽

10.1007/978-1-4939-9608-7_5 ◽

2019 ◽

pp. 105-127 ◽

Cited By ~ 9

Author(s):

Bart M. H. Bruininks ◽

Paulo C. T. Souza ◽

Siewert J. Marrink

Keyword(s):

Force Field ◽

Martini Force Field

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Using Data-Reduction Techniques to Analyze Biomolecular Trajectories

Methods in Molecular Biology - Biomolecular Simulations ◽

10.1007/978-1-4939-9608-7_19 ◽

2019 ◽

pp. 453-502 ◽

Cited By ~ 1

Author(s):

Gareth A. Tribello ◽

Piero Gasparotto

Keyword(s):

Data Reduction ◽

Reduction Techniques ◽

Using Data

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Coarse Graining of a Giant Molecular System: The Chromatin Fiber

Methods in Molecular Biology - Biomolecular Simulations ◽

10.1007/978-1-4939-9608-7_17 ◽

2019 ◽

pp. 399-411

Author(s):

Guido Tiana ◽

Luca Giorgetti

Keyword(s):

Molecular System ◽

Coarse Graining ◽

Chromatin Fiber

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Inferring Structural Ensembles of Flexible and Dynamic Macromolecules Using Bayesian, Maximum Entropy, and Minimal-Ensemble Refinement Methods

Methods in Molecular Biology - Biomolecular Simulations ◽

10.1007/978-1-4939-9608-7_14 ◽

2019 ◽

pp. 341-352 ◽

Cited By ~ 4

Author(s):

Jürgen Köfinger ◽

Bartosz Różycki ◽

Gerhard Hummer

Keyword(s):

Maximum Entropy ◽

Bayesian Maximum Entropy ◽

Structural Ensembles

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Analysis Libraries for Molecular Trajectories: A Cross-Language Synopsis

Methods in Molecular Biology - Biomolecular Simulations ◽

10.1007/978-1-4939-9608-7_20 ◽

2019 ◽

pp. 503-527

Author(s):

Toni Giorgino

Keyword(s):

Cross Language

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Using SMOG 2 to Simulate Complex Biomolecular Assemblies

Methods in Molecular Biology - Biomolecular Simulations ◽

10.1007/978-1-4939-9608-7_6 ◽

2019 ◽

pp. 129-151

Author(s):

Mariana Levi ◽

Prasad Bandarkar ◽

Huan Yang ◽

Ailun Wang ◽

Udayan Mohanty ◽

...

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Methods in Molecular Biology - Biomolecular SimulationsLatest Publications

TOTAL DOCUMENTS

H-INDEX

Published By Springer New York

Quantum Chemical and QM/MM Models in Biochemistry

Improvement of RNA Simulations with Torsional Revisions of the AMBER Force Field

The Adaptive Path Collective Variable: A Versatile Biasing Approach to Compute the Average Transition Path and Free Energy of Molecular Transitions

Protein–Ligand Binding Free Energy Calculations with FEP+

A Practical View of the Martini Force Field

Using Data-Reduction Techniques to Analyze Biomolecular Trajectories

Coarse Graining of a Giant Molecular System: The Chromatin Fiber

Inferring Structural Ensembles of Flexible and Dynamic Macromolecules Using Bayesian, Maximum Entropy, and Minimal-Ensemble Refinement Methods

Analysis Libraries for Molecular Trajectories: A Cross-Language Synopsis

Using SMOG 2 to Simulate Complex Biomolecular Assemblies

Methods in Molecular Biology - Biomolecular Simulations
Latest Publications