Methods in Molecular Biology - Biomolecular Simulations
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Published By Springer New York

9781493996070, 9781493996087

Latest Documents Most Cited Documents Contributed Authors Related Sources Related Keywords

Improvement of RNA Simulations with Torsional Revisions of the AMBER Force Field

Methods in Molecular Biology - Biomolecular Simulations ◽

10.1007/978-1-4939-9608-7_3 ◽

2019 ◽

pp. 55-74 ◽

Cited By ~ 1

Author(s):

Ilyas Yildirim

Keyword(s):

Force Field ◽

Amber Force Field

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Quantum Chemical and QM/MM Models in Biochemistry

Methods in Molecular Biology - Biomolecular Simulations ◽

10.1007/978-1-4939-9608-7_4 ◽

2019 ◽

pp. 75-104

Author(s):

Patricia Saura ◽

Michael Röpke ◽

Ana P. Gamiz-Hernandez ◽

Ville R. I. Kaila

Keyword(s):

Quantum Chemical

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The Adaptive Path Collective Variable: A Versatile Biasing Approach to Compute the Average Transition Path and Free Energy of Molecular Transitions

Methods in Molecular Biology - Biomolecular Simulations ◽

10.1007/978-1-4939-9608-7_11 ◽

2019 ◽

pp. 255-290

Author(s):

Alberto Pérez de Alba Ortíz ◽

Jocelyne Vreede ◽

Bernd Ensing

Keyword(s):

Free Energy ◽

Collective Variable ◽

Transition Path ◽

Average Transition

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Using Data-Reduction Techniques to Analyze Biomolecular Trajectories

Methods in Molecular Biology - Biomolecular Simulations ◽

10.1007/978-1-4939-9608-7_19 ◽

2019 ◽

pp. 453-502 ◽

Cited By ~ 1

Author(s):

Gareth A. Tribello ◽

Piero Gasparotto

Keyword(s):

Data Reduction ◽

Reduction Techniques ◽

Using Data

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Protein–Ligand Binding Free Energy Calculations with FEP+

Methods in Molecular Biology - Biomolecular Simulations ◽

10.1007/978-1-4939-9608-7_9 ◽

2019 ◽

pp. 201-232 ◽

Cited By ~ 3

Author(s):

Lingle Wang ◽

Jennifer Chambers ◽

Robert Abel

Keyword(s):

Free Energy ◽

Ligand Binding ◽

Binding Free Energy ◽

Free Energy Calculations ◽

Energy Calculations ◽

Binding Free Energy Calculations

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A Practical View of the Martini Force Field

Methods in Molecular Biology - Biomolecular Simulations ◽

10.1007/978-1-4939-9608-7_5 ◽

2019 ◽

pp. 105-127 ◽

Cited By ~ 9

Author(s):

Bart M. H. Bruininks ◽

Paulo C. T. Souza ◽

Siewert J. Marrink

Keyword(s):

Force Field ◽

Martini Force Field

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Coarse Graining of a Giant Molecular System: The Chromatin Fiber

Methods in Molecular Biology - Biomolecular Simulations ◽

10.1007/978-1-4939-9608-7_17 ◽

2019 ◽

pp. 399-411

Author(s):

Guido Tiana ◽

Luca Giorgetti

Keyword(s):

Molecular System ◽

Coarse Graining ◽

Chromatin Fiber

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Inferring Structural Ensembles of Flexible and Dynamic Macromolecules Using Bayesian, Maximum Entropy, and Minimal-Ensemble Refinement Methods

Methods in Molecular Biology - Biomolecular Simulations ◽

10.1007/978-1-4939-9608-7_14 ◽

2019 ◽

pp. 341-352 ◽

Cited By ~ 4

Author(s):

Jürgen Köfinger ◽

Bartosz Różycki ◽

Gerhard Hummer

Keyword(s):

Maximum Entropy ◽

Bayesian Maximum Entropy ◽

Structural Ensembles

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Analysis Libraries for Molecular Trajectories: A Cross-Language Synopsis

Methods in Molecular Biology - Biomolecular Simulations ◽

10.1007/978-1-4939-9608-7_20 ◽

2019 ◽

pp. 503-527

Author(s):

Toni Giorgino

Keyword(s):

Cross Language

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Using SMOG 2 to Simulate Complex Biomolecular Assemblies

Methods in Molecular Biology - Biomolecular Simulations ◽

10.1007/978-1-4939-9608-7_6 ◽

2019 ◽

pp. 129-151

Author(s):

Mariana Levi ◽

Prasad Bandarkar ◽

Huan Yang ◽

Ailun Wang ◽

Udayan Mohanty ◽

...

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Methods in Molecular Biology - Biomolecular SimulationsLatest Publications

TOTAL DOCUMENTS

H-INDEX

Published By Springer New York

Improvement of RNA Simulations with Torsional Revisions of the AMBER Force Field

Quantum Chemical and QM/MM Models in Biochemistry

The Adaptive Path Collective Variable: A Versatile Biasing Approach to Compute the Average Transition Path and Free Energy of Molecular Transitions

Using Data-Reduction Techniques to Analyze Biomolecular Trajectories

Protein–Ligand Binding Free Energy Calculations with FEP+

A Practical View of the Martini Force Field

Coarse Graining of a Giant Molecular System: The Chromatin Fiber

Inferring Structural Ensembles of Flexible and Dynamic Macromolecules Using Bayesian, Maximum Entropy, and Minimal-Ensemble Refinement Methods

Analysis Libraries for Molecular Trajectories: A Cross-Language Synopsis

Using SMOG 2 to Simulate Complex Biomolecular Assemblies

Methods in Molecular Biology - Biomolecular Simulations
Latest Publications