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Identifying Protein Complexes from Protein-Protein Interaction Networks
Algorithmic and Artificial Intelligence Methods for Protein Bioinformatics
◽
10.1002/9781118567869.ch19
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2013
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pp. 377-392
Author(s):
Jianxin Wang
◽
Min Li
◽
Xiaoqing Peng
Keyword(s):
Protein Interaction
◽
Protein Complexes
◽
Protein Interaction Networks
◽
Interaction Networks
◽
Protein Protein Interaction
◽
Protein Protein Interaction Networks
Download Full-text
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References
Identifying Protein Complexes from Protein-protein Interaction Networks Based on Fuzzy Clustering and GO Semantic Information
IEEE/ACM Transactions on Computational Biology and Bioinformatics
◽
10.1109/tcbb.2021.3095947
◽
2021
◽
pp. 1-1
Author(s):
Xiangyu Pan
◽
Lun Hu
◽
Pengwei Hu
◽
Zhu-Hong You
Keyword(s):
Fuzzy Clustering
◽
Protein Interaction
◽
Semantic Information
◽
Protein Complexes
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Protein Interaction Networks
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Interaction Networks
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Protein Protein Interaction
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Protein Protein Interaction Networks
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Identification of overlapping protein complexes by fuzzy K-medoids clustering algorithm in yeast protein-protein interaction networks
Journal of Intelligent & Fuzzy Systems
◽
10.3233/jifs-17026
◽
2018
◽
Vol 34
(1)
◽
pp. 93-103
◽
Cited By ~ 2
Author(s):
Buwen Cao
◽
Shuguang Deng
◽
Jiawei Luo
◽
Pingjian Ding
◽
Shulin Wang
Keyword(s):
Protein Interaction
◽
Clustering Algorithm
◽
Protein Complexes
◽
Protein Interaction Networks
◽
Interaction Networks
◽
Yeast Protein
◽
Protein Protein Interaction
◽
Protein Protein Interaction Networks
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Identifying protein complexes based on node embeddings obtained from protein-protein interaction networks
BMC Bioinformatics
◽
10.1186/s12859-018-2364-2
◽
2018
◽
Vol 19
(1)
◽
Cited By ~ 1
Author(s):
Xiaoxia Liu
◽
Zhihao Yang
◽
Shengtian Sang
◽
Ziwei Zhou
◽
Lei Wang
◽
...
Keyword(s):
Protein Interaction
◽
Protein Complexes
◽
Protein Interaction Networks
◽
Interaction Networks
◽
Protein Protein Interaction
◽
Protein Protein Interaction Networks
◽
Node Embeddings
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A Core-Attachment Algorithm Based on Expected-Density and GO Terms to Detect Protein Complexes in Uncertain Protein-Protein Interaction Networks
International Journal of Digital Content Technology and its Applications
◽
10.4156/jdcta.vol7.issue8.6
◽
2013
◽
Vol 7
(8)
◽
pp. 49-57
Author(s):
Jiawei Luo
◽
Weifeng Hu
Keyword(s):
Protein Interaction
◽
Protein Complexes
◽
Protein Interaction Networks
◽
Interaction Networks
◽
Protein Protein Interaction
◽
Protein Protein Interaction Networks
◽
Go Terms
◽
Expected Density
Download Full-text
PCE-FR: A Novel Method for Identifying Overlapping Protein Complexes in Weighted Protein-Protein Interaction Networks Using Pseudo-Clique Extension Based on Fuzzy Relation
IEEE Transactions on NanoBioscience
◽
10.1109/tnb.2016.2611683
◽
2016
◽
Vol 15
(7)
◽
pp. 728-738
◽
Cited By ~ 4
Author(s):
Buwen Cao
◽
Jiawei Luo
◽
Cheng Liang
◽
Shulin Wang
◽
Pingjian Ding
Keyword(s):
Protein Interaction
◽
Protein Complexes
◽
Fuzzy Relation
◽
Protein Interaction Networks
◽
Interaction Networks
◽
Protein Protein Interaction
◽
Novel Method
◽
Protein Protein Interaction Networks
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Identifying protein complexes in protein-protein interaction networks by using clique seeds and graph entropy
PROTEOMICS
◽
10.1002/pmic.201200336
◽
2012
◽
Vol 13
(2)
◽
pp. 269-277
◽
Cited By ~ 28
Author(s):
Bolin Chen
◽
Jinhong Shi
◽
Shenggui Zhang
◽
Fang-Xiang Wu
Keyword(s):
Protein Interaction
◽
Protein Complexes
◽
Protein Interaction Networks
◽
Interaction Networks
◽
Protein Protein Interaction
◽
Protein Protein Interaction Networks
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An uncertain model-based approach for identifying dynamic protein complexes in uncertain protein-protein interaction networks
BMC Genomics
◽
10.1186/s12864-017-4131-6
◽
2017
◽
Vol 18
(S7)
◽
Cited By ~ 5
Author(s):
Yijia Zhang
◽
Hongfei Lin
◽
Zhihao Yang
◽
Jian Wang
◽
Yiwei Liu
Keyword(s):
Protein Interaction
◽
Protein Complexes
◽
Protein Interaction Networks
◽
Interaction Networks
◽
Protein Protein Interaction
◽
Model Based
◽
Uncertain Model
◽
Protein Protein Interaction Networks
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RocSampler: regularizing overlapping protein complexes in protein-protein interaction networks
BMC Bioinformatics
◽
10.1186/s12859-017-1920-5
◽
2017
◽
Vol 18
(S15)
◽
Author(s):
Osamu Maruyama
◽
Yuki Kuwahara
Keyword(s):
Protein Interaction
◽
Protein Complexes
◽
Protein Interaction Networks
◽
Interaction Networks
◽
Protein Protein Interaction
◽
Protein Protein Interaction Networks
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Detecting overlapping protein complexes in protein-protein interaction networks
Nature Methods
◽
10.1038/nmeth.1938
◽
2012
◽
Vol 9
(5)
◽
pp. 471-472
◽
Cited By ~ 701
Author(s):
Tamás Nepusz
◽
Haiyuan Yu
◽
Alberto Paccanaro
Keyword(s):
Protein Interaction
◽
Protein Complexes
◽
Protein Interaction Networks
◽
Interaction Networks
◽
Protein Protein Interaction
◽
Protein Protein Interaction Networks
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Detecting temporal protein complexes from dynamic protein-protein interaction networks
BMC Bioinformatics
◽
10.1186/1471-2105-15-335
◽
2014
◽
Vol 15
(1)
◽
pp. 335
◽
Cited By ~ 37
Author(s):
Le Ou-Yang
◽
Dao-Qing Dai
◽
Xiao-Li Li
◽
Min Wu
◽
Xiao-Fei Zhang
◽
...
Keyword(s):
Protein Interaction
◽
Protein Complexes
◽
Protein Interaction Networks
◽
Interaction Networks
◽
Protein Protein Interaction
◽
Protein Protein Interaction Networks
Download Full-text
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