Conformational transitions of flanking purines in HIV-1 RNA dimerization initiation site kissing complexes studied by CHARMM explicit solvent molecular dynamics

Biopolymers ◽  
2008 ◽  
Vol 89 (9) ◽  
pp. 732-746 ◽  
Author(s):  
Joanna Sarzyńska ◽  
Kamila Réblová ◽  
Jiří Šponer ◽  
Tadeusz Kuliński
Keyword(s):  
Molecular Dynamics ◽  
Conformational Transitions ◽  
Initiation Site ◽  
Rna Dimerization ◽  
Explicit Solvent ◽  
Hiv 1 ◽  
Dimerization Initiation Site

Binding of Aminoglycoside Antibiotics to the Duplex Form of the HIV-1 Genomic RNA Dimerization Initiation Site

2008 ◽  
Vol 47 (22) ◽  
pp. 4110-4113 ◽  
Author(s):  
Séverine Freisz ◽  
Kathrin Lang ◽  
Ronald Micura ◽  
Philippe Dumas ◽  
Eric Ennifar
Keyword(s):  
Initiation Site ◽  
Aminoglycoside Antibiotics ◽  
Genomic Rna ◽  
Rna Dimerization ◽  
Hiv 1 ◽  
Dimerization Initiation Site

A structure-based approach for targeting the HIV-1 genomic RNA dimerization initiation site

Biochimie ◽  
2007 ◽  
Vol 89 (10) ◽  
pp. 1195-1203 ◽  
Author(s):  
E ENNIFAR ◽  
J PAILLART ◽  
S BERNACCHI ◽  
P WALTER ◽  
P PALE ◽  
...  
Keyword(s):  
Initiation Site ◽  
Genomic Rna ◽  
Rna Dimerization ◽  
Hiv 1 ◽  
Dimerization Initiation Site

scholarly journals HIV-1 RNA Dimerization Initiation Site Is Structurally Similar to the Ribosomal A Site and Binds Aminoglycoside Antibiotics

2002 ◽  
Vol 278 (4) ◽  
pp. 2723-2730 ◽  
Author(s):  
Eric Ennifar ◽  
Jean-Christophe Paillart ◽  
Roland Marquet ◽  
Bernard Ehresmann ◽  
Chantal Ehresmann ◽  
...  
Keyword(s):  
Initiation Site ◽  
Aminoglycoside Antibiotics ◽  
Rna Dimerization ◽  
A Site ◽  
Hiv 1 ◽  
Dimerization Initiation Site

scholarly journals Aminoglycoside binding to the HIV-1 RNA dimerization initiation site: thermodynamics and effect on the kissing-loop to duplex conversion

2007 ◽  
Vol 35 (21) ◽  
pp. 7128-7139 ◽  
Author(s):  
Serena Bernacchi ◽  
Séverine Freisz ◽  
Clarisse Maechling ◽  
Bernard Spiess ◽  
Roland Marquet ◽  
...  
Keyword(s):  
Initiation Site ◽  
Rna Dimerization ◽  
Hiv 1 ◽  
Dimerization Initiation Site ◽  
Kissing Loop

Binding of Aminoglycoside Antibiotics to the Duplex Form of the HIV-1 Genomic RNA Dimerization Initiation Site

2008 ◽  
Vol 120 (22) ◽  
pp. 4178-4181 ◽  
Author(s):  
Séverine Freisz ◽  
Kathrin Lang ◽  
Ronald Micura ◽  
Philippe Dumas ◽  
Eric Ennifar
Keyword(s):  
Initiation Site ◽  
Aminoglycoside Antibiotics ◽  
Genomic Rna ◽  
Rna Dimerization ◽  
Hiv 1 ◽  
Dimerization Initiation Site

scholarly journals Cation-dependent cleavage of the duplex form of the subtype-B HIV-1 RNA dimerization initiation site

2010 ◽  
Vol 38 (17) ◽  
pp. 5807-5816 ◽  
Author(s):  
Eric Ennifar ◽  
Philippe Walter ◽  
Philippe Dumas
Keyword(s):  
Initiation Site ◽  
Rna Dimerization ◽  
Subtype B ◽  
Hiv 1 ◽  
Dimerization Initiation Site

scholarly journals Structure of the 30 kDa HIV-1 RNA Dimerization Signal by a Hybrid Cryo-EM, NMR, and Molecular Dynamics Approach

Structure ◽  
2018 ◽  
Vol 26 (3) ◽  
pp. 490-498.e3 ◽  
Author(s):  
Kaiming Zhang ◽  
Sarah C. Keane ◽  
Zhaoming Su ◽  
Rossitza N. Irobalieva ◽  
Muyuan Chen ◽  
...  
Keyword(s):  
Molecular Dynamics ◽  
Rna Dimerization ◽  
Hiv 1
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