Prediction and classification of protein subcellular location-sequence-order effect and pseudo amino acid composition

Kuo-Chen Chou; Yu-Dong Cai

doi:10.1002/jcb.10719

Prediction and classification of protein subcellular location-sequence-order effect and pseudo amino acid composition

Journal of Cellular Biochemistry ◽

10.1002/jcb.10719 ◽

2003 ◽

Vol 90 (6) ◽

pp. 1250-1260 ◽

Cited By ~ 111

Author(s):

Kuo-Chen Chou ◽

Yu-Dong Cai

Keyword(s):

Amino Acid ◽

Amino Acid Composition ◽

Acid Composition ◽

Subcellular Location ◽

Order Effect ◽

Pseudo Amino Acid Composition ◽

Protein Subcellular Location

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Protein Subcellular Location Prediction Based on Pseudo Amino Acid Composition and PSI-Blast Profile

Journal of Computational and Theoretical Nanoscience ◽

10.1166/jctn.2015.4272 ◽

2015 ◽

Vol 12 (10) ◽

pp. 3756-3762 ◽

Cited By ~ 2

Author(s):

Huimin Xu ◽

Shoujiang Yan ◽

Qi Dai ◽

Ping-An He ◽

Bo Liao ◽

...

Keyword(s):

Amino Acid ◽

Amino Acid Composition ◽

Acid Composition ◽

Subcellular Location ◽

Location Prediction ◽

Pseudo Amino Acid Composition ◽

Protein Subcellular Location ◽

Subcellular Location Prediction ◽

Protein Subcellular Location Prediction

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Using pseudo amino acid composition to predict protein subcellular location: Approached with Lyapunov index, Bessel function, and Chebyshev filter

Amino Acids ◽

10.1007/s00726-005-0206-9 ◽

2005 ◽

Vol 28 (4) ◽

pp. 373-376 ◽

Cited By ~ 106

Author(s):

Y. Gao ◽

S. Shao ◽

X. Xiao ◽

Y. Ding ◽

Y. Huang ◽

...

Keyword(s):

Amino Acid ◽

Amino Acid Composition ◽

Bessel Function ◽

Acid Composition ◽

Subcellular Location ◽

Pseudo Amino Acid Composition ◽

Protein Subcellular Location ◽

Lyapunov Index ◽

Chebyshev Filter

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Predicting Protein Subcellular Location Using Chous Pseudo Amino Acid Composition and Improved Hybrid Approach

Protein and Peptide Letters ◽

10.2174/092986608784966930 ◽

2008 ◽

Vol 15 (6) ◽

pp. 612-616 ◽

Cited By ~ 121

Author(s):

Feng-Min Li ◽

Qian-Zhong Li

Keyword(s):

Amino Acid ◽

Amino Acid Composition ◽

Acid Composition ◽

Hybrid Approach ◽

Subcellular Location ◽

Pseudo Amino Acid Composition ◽

Protein Subcellular Location

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Using Grey Model GM(2,1) and Pseudo Amino Acid Composition to Predict Protein Subcellular Location

2008 2nd International Conference on Bioinformatics and Biomedical Engineering ◽

10.1109/icbbe.2008.175 ◽

2008 ◽

Cited By ~ 1

Author(s):

Wei-Zhong Lin ◽

Xuan Xiao

Keyword(s):

Amino Acid ◽

Amino Acid Composition ◽

Acid Composition ◽

Subcellular Location ◽

Grey Model ◽

Pseudo Amino Acid Composition ◽

Protein Subcellular Location

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Using cellular automata images and pseudo amino acid composition to predict protein subcellular location

Amino Acids ◽

10.1007/s00726-005-0225-6 ◽

2005 ◽

Vol 30 (1) ◽

pp. 49-54 ◽

Cited By ~ 162

Author(s):

X. Xiao ◽

S. Shao ◽

Y. Ding ◽

Z. Huang ◽

K.-C. Chou

Keyword(s):

Amino Acid ◽

Cellular Automata ◽

Amino Acid Composition ◽

Acid Composition ◽

Subcellular Location ◽

Pseudo Amino Acid Composition ◽

Protein Subcellular Location

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Prediction of apoptosis protein subcellular location using improved hybrid approach and pseudo-amino acid composition

Journal of Theoretical Biology ◽

10.1016/j.jtbi.2007.05.019 ◽

2007 ◽

Vol 248 (2) ◽

pp. 377-381 ◽

Cited By ~ 131

Author(s):

Ying-Li Chen ◽

Qian-Zhong Li

Keyword(s):

Amino Acid ◽

Amino Acid Composition ◽

Acid Composition ◽

Hybrid Approach ◽

Subcellular Location ◽

Pseudo Amino Acid Composition ◽

Protein Subcellular Location ◽

Apoptosis Protein

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Using pseudo amino acid composition to predict protein subcellular location: approached with amino acid composition distribution

Amino Acids ◽

10.1007/s00726-007-0623-z ◽

2008 ◽

Vol 35 (2) ◽

pp. 321-327 ◽

Cited By ~ 46

Author(s):

J.-Y. Shi ◽

S.-W. Zhang ◽

Q. Pan ◽

G.-P. Zhou

Keyword(s):

Amino Acid ◽

Amino Acid Composition ◽

Acid Composition ◽

Subcellular Location ◽

Pseudo Amino Acid Composition ◽

Composition Distribution ◽

Protein Subcellular Location

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Nearest neighbour algorithm for predicting protein subcellular location by combining functional domain composition and pseudo-amino acid composition

Biochemical and Biophysical Research Communications ◽

10.1016/s0006-291x(03)00775-7 ◽

2003 ◽

Vol 305 (2) ◽

pp. 407-411 ◽

Cited By ~ 73

Author(s):

Yu-Dong Cai ◽

Kuo-Chen Chou

Keyword(s):

Amino Acid ◽

Amino Acid Composition ◽

Acid Composition ◽

Subcellular Location ◽

Functional Domain ◽

Nearest Neighbour ◽

Pseudo Amino Acid Composition ◽

Protein Subcellular Location ◽

Domain Composition

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GOASVM: A subcellular location predictor by incorporating term-frequency gene ontology into the general form of Chou's pseudo-amino acid composition

Journal of Theoretical Biology ◽

10.1016/j.jtbi.2013.01.012 ◽

2013 ◽

Vol 323 ◽

pp. 40-48 ◽

Cited By ~ 78

Author(s):

Shibiao Wan ◽

Man-Wai Mak ◽

Sun-Yuan Kung

Keyword(s):

Gene Ontology ◽

Amino Acid ◽

Amino Acid Composition ◽

Acid Composition ◽

Subcellular Location ◽

Pseudo Amino Acid Composition ◽

Term Frequency

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Prediction of Subcellular Location of Apoptosis Proteins Using Pseudo Amino Acid Composition: An Approach from Auto Covariance Transformation

Protein and Peptide Letters ◽

10.2174/092986610792231528 ◽

2010 ◽

Vol 17 (10) ◽

pp. 1263-1269 ◽

Cited By ~ 41

Author(s):

Taigang Liu ◽

Xiaoqi Zheng ◽

Chunhua Wang ◽

Jun Wang

Keyword(s):

Amino Acid ◽

Amino Acid Composition ◽

Acid Composition ◽

Subcellular Location ◽

Pseudo Amino Acid Composition ◽

Auto Covariance ◽

Apoptosis Proteins ◽

Auto Covariance Transformation

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