Estimation of Protein Secondary Structure from Circular Dichroism Spectra: Inclusion of Denatured Proteins with Native Proteins in the Analysis

Narasimha Sreerama; Sergei Yu. Venyaminov; Robert W. Woody

doi:10.1006/abio.2000.4879

Estimation of Protein Secondary Structure from Circular Dichroism Spectra: Inclusion of Denatured Proteins with Native Proteins in the Analysis

Analytical Biochemistry ◽

10.1006/abio.2000.4879 ◽

2000 ◽

Vol 287 (2) ◽

pp. 243-251 ◽

Cited By ~ 395

Author(s):

Narasimha Sreerama ◽

Sergei Yu. Venyaminov ◽

Robert W. Woody

Keyword(s):

Circular Dichroism ◽

Secondary Structure ◽

Protein Secondary Structure ◽

Circular Dichroism Spectra ◽

Native Proteins ◽

Denatured Proteins ◽

Circular Dichroïsm

Download Full-text

Estimation of protein secondary structure from synchrotron radiation circular dichroism spectra

The 26th Annual International Conference of the IEEE Engineering in Medicine and Biology Society ◽

10.1109/iembs.2004.1403823 ◽

2005 ◽

Author(s):

A. Procopiou ◽

N.M. Allinson ◽

G.R. Jones ◽

D.T. Clarke

Keyword(s):

Circular Dichroism ◽

Synchrotron Radiation ◽

Secondary Structure ◽

Protein Secondary Structure ◽

Circular Dichroism Spectra ◽

Circular Dichroïsm

Download Full-text

Variable selection method improves the prediction of protein secondary structure from circular dichroism spectra

Analytical Biochemistry ◽

10.1016/0003-2697(87)90135-7 ◽

1987 ◽

Vol 167 (1) ◽

pp. 76-85 ◽

Cited By ~ 489

Author(s):

Parthasarathy Manavalan ◽

W.Curtis Johnson

Keyword(s):

Circular Dichroism ◽

Secondary Structure ◽

Variable Selection ◽

Protein Secondary Structure ◽

Selection Method ◽

Circular Dichroism Spectra ◽

Variable Selection Method ◽

Circular Dichroïsm

Download Full-text

BeStSel: a web server for accurate protein secondary structure prediction and fold recognition from the circular dichroism spectra

Nucleic Acids Research ◽

10.1093/nar/gky497 ◽

2018 ◽

Vol 46 (W1) ◽

pp. W315-W322 ◽

Cited By ~ 212

Author(s):

András Micsonai ◽

Frank Wien ◽

Éva Bulyáki ◽

Judit Kun ◽

Éva Moussong ◽

...

Keyword(s):

Circular Dichroism ◽

Secondary Structure ◽

Structure Prediction ◽

Secondary Structure Prediction ◽

Protein Secondary Structure ◽

Web Server ◽

Fold Recognition ◽

Circular Dichroism Spectra ◽

Protein Secondary Structure Prediction ◽

Circular Dichroïsm

Download Full-text

K2D2: Estimation of protein secondary structure from circular dichroism spectra

BMC Structural Biology ◽

10.1186/1472-6807-8-25 ◽

2008 ◽

Vol 8 (1) ◽

pp. 25 ◽

Cited By ~ 264

Author(s):

Carolina Perez-Iratxeta ◽

Miguel A Andrade-Navarro

Keyword(s):

Circular Dichroism ◽

Secondary Structure ◽

Protein Secondary Structure ◽

Circular Dichroism Spectra ◽

Circular Dichroïsm

Download Full-text

Protein Secondary Structure Prediction from Circular Dichroism Spectra Using a Self-Organizing Map with Concentration Correction

Chirality ◽

10.1002/chir.22338 ◽

2014 ◽

Vol 26 (9) ◽

pp. 471-482 ◽

Cited By ~ 11

Author(s):

Vincent Hall ◽

Meropi Sklepari ◽

Alison Rodger

Keyword(s):

Circular Dichroism ◽

Secondary Structure ◽

Structure Prediction ◽

Secondary Structure Prediction ◽

Protein Secondary Structure ◽

Self Organizing Map ◽

Circular Dichroism Spectra ◽

Protein Secondary Structure Prediction ◽

Circular Dichroïsm ◽

Self Organizing

Download Full-text

SOMCD: Method for evaluating protein secondary structure from UV circular dichroism spectra

Proteins Structure Function and Bioinformatics ◽

10.1002/1097-0134(20010301)42:4<460::aid-prot50>3.0.co;2-u ◽

2001 ◽

Vol 42 (4) ◽

pp. 460-470 ◽

Cited By ~ 56

Author(s):

Per Unneberg ◽

Juan J. Merelo ◽

Pablo Chacón ◽

Federico Morán

Keyword(s):

Circular Dichroism ◽

Secondary Structure ◽

Protein Secondary Structure ◽

Circular Dichroism Spectra ◽

Circular Dichroïsm

Download Full-text

Protein secondary structure from circular dichroism spectra

Journal of Biosciences ◽

10.1007/bf02703972 ◽

1985 ◽

Vol 8 (1-2) ◽

pp. 141-149 ◽

Cited By ~ 39

Author(s):

Parthasarathy Manavalan ◽

W. Curtis Johnson

Keyword(s):

Circular Dichroism ◽

Secondary Structure ◽

Protein Secondary Structure ◽

Circular Dichroism Spectra ◽

Circular Dichroïsm

Download Full-text

Estimation of Protein Secondary Structure from Circular Dichroism Spectra: Comparison of CONTIN, SELCON, and CDSSTR Methods with an Expanded Reference Set

Analytical Biochemistry ◽

10.1006/abio.2000.4880 ◽

2000 ◽

Vol 287 (2) ◽

pp. 252-260 ◽

Cited By ~ 1979

Author(s):

Narasimha Sreerama ◽

Robert W. Woody

Keyword(s):

Circular Dichroism ◽

Secondary Structure ◽

Protein Secondary Structure ◽

Circular Dichroism Spectra ◽

Reference Set ◽

Circular Dichroïsm

Download Full-text

Protein Secondary Structure from Fourier Transform Infrared and/or Circular Dichroism Spectra

Analytical Biochemistry ◽

10.1006/abio.1993.1511 ◽

1993 ◽

Vol 214 (2) ◽

pp. 366-378 ◽

Cited By ~ 85

Author(s):

R. Pribic ◽

I.H.M. Vanstokkum ◽

D. Chapman ◽

P.I. Haris ◽

M. Bloemendal

Keyword(s):

Fourier Transform ◽

Circular Dichroism ◽

Secondary Structure ◽

Protein Secondary Structure ◽

Fourier Transform Infrared ◽

Circular Dichroism Spectra ◽

Circular Dichroïsm

Download Full-text

Prediction of Protein Secondary Structure from Circular Dichroism Spectra: An Attempt to Solve the Problem of the Best-Fitting Reference Protein Subsets

Analytical Biochemistry ◽

10.1006/abio.1995.1105 ◽

1995 ◽

Vol 225 (1) ◽

pp. 39-48 ◽

Cited By ~ 12

Author(s):

B. Dalmas ◽

W.H. Bannister

Keyword(s):

Circular Dichroism ◽

Secondary Structure ◽

Protein Secondary Structure ◽

Circular Dichroism Spectra ◽

Reference Protein ◽

Best Fitting ◽

Circular Dichroïsm

Download Full-text