Molecular dynamics simulations of B′-DNA: sequence effects on A-tract-induced bending and flexibility

Dna Sequence ◽

Sequence Effects ◽

The use of molecular dynamics simulations to evaluate the DNA sequence-selectivity of G–A cross-linking PBD–duocarmycin dimers

Bioorganic & Medicinal Chemistry Letters ◽

10.1016/j.bmcl.2016.10.022 ◽

2017 ◽

Vol 27 (1) ◽

pp. 102-108 ◽

Cited By ~ 2

Author(s):

Paul J.M. Jackson ◽

Khondaker M. Rahman ◽

David E. Thurston

Keyword(s):

Molecular Dynamics ◽

Dna Sequence ◽

Cross Linking ◽

Sequence Selectivity ◽

Studies of base pair sequence effects on DNA solvation based on all-atom molecular dynamics simulations

Journal of Biosciences ◽

10.1007/s12038-012-9223-5 ◽

2012 ◽

Vol 37 (3) ◽

pp. 399-421 ◽

Cited By ~ 19

Author(s):

Surjit B Dixit ◽

Mihaly Mezei ◽

David L Beveridge

Keyword(s):

Molecular Dynamics ◽

Base Pair ◽

Sequence Effects ◽

Pair Sequence ◽

Abstract 5370: Use of molecular dynamics simulations to rationalise the DNA sequence-selectivity of pyrrolobenzodiazepine-MPB conjugates

10.1158/1538-7445.am2014-5370 ◽

2014 ◽

Cited By ~ 2

Author(s):

Paul JM Jackson ◽

Khondaker M. Rahman ◽

David E. Thurston

Keyword(s):

Molecular Dynamics ◽

Dna Sequence ◽

Sequence Selectivity ◽

Molecular Dynamics Simulations in Solvent of the Glucocorticoid Receptor Protein in Complex With a Glucocorticoid Response Element DNA Sequence

Journal of Biomolecular Structure and Dynamics ◽

10.1080/07391102.1994.10508740 ◽

1994 ◽

Vol 12 (2) ◽

pp. 249-270 ◽

Cited By ~ 14

Author(s):

Lester F. Harris ◽

Michael R. Sullivan ◽

Pamela D. Popken-Harris ◽

David F. Hickok

Keyword(s):

Molecular Dynamics ◽

Glucocorticoid Receptor ◽

Dna Sequence ◽

Receptor Protein ◽

Glucocorticoid Response Element ◽

Response Element ◽

Glucocorticoid Response ◽

Structure of phosphorus-selenium glasses: results from ab initio molecular dynamics simulations

Molecular Physics ◽

10.1080/002689700162045 ◽

2000 ◽

Vol 98 (11) ◽

pp. 701-707

Author(s):

Alessandro Sergi, Mauro Ferrario, Francesco Bu

Keyword(s):

Molecular Dynamics ◽

Ab Initio ◽

Ab Initio Molecular Dynamics ◽

Tracer diffusion in perfectly aligned liquid crystalline phases Kinetic theory and molecular dynamics simulations

Molecular Physics ◽

10.1080/00268979709482789 ◽

1997 ◽

Vol 91 (6) ◽

pp. 993-1003 ◽

Cited By ~ 1

Author(s):

ANJALI KHARE ◽

DAVID KOFKE ◽

GLENN EVANS

Keyword(s):

Molecular Dynamics ◽

Kinetic Theory ◽

Liquid Crystalline ◽

Tracer Diffusion ◽

Crystalline Phases ◽

Liquid Crystalline Phases ◽

ERRATUM Molecular dynamics simulations of liquid crystal phases using atomistic potentials

Molecular Physics ◽

10.1080/002689798167430 ◽

1998 ◽

Vol 95 (1) ◽

pp. 121-121

Author(s):

CARL MCBRIDE MARK R. WILSON JUDITH A. K.

Keyword(s):

Molecular Dynamics ◽

Liquid Crystal ◽

Crystal Phases ◽

Dynamics Simulations ◽

Liquid Crystal Phases

Nonequilibrium Molecular Dynamics Simulations of 3-Methylhexane: The Effect of Inter- and Intramolecular Potential Models on Simulated Viscosity

The Journal of Physical Chemistry A ◽

10.1021/jp971476g ◽

1997 ◽

Vol 101 (27) ◽

pp. 5026-5026

Author(s):

Maija Lahtela ◽

Tapani A. Pakkanen ◽

Richard L. Rowley

Keyword(s):

Molecular Dynamics ◽

Nonequilibrium Molecular Dynamics ◽

Potential Models ◽

Assessment of all-atom potentials for modeling membranes: molecular dynamics simulations of solid and liquid alkanes and crystals of phospholipid fragments

Journal de Chimie Physique ◽

10.1051/jcp/1997941482 ◽

1997 ◽

Vol 94 ◽

pp. 1482-1502 ◽

Cited By ~ 27

Author(s):

DJ Tobias ◽

K Tu ◽

ML Klein

Keyword(s):

Molecular Dynamics ◽

Dynamics Simulations ◽

Liquid Alkanes

Molecular Dynamics Simulations of Retrograde Condensation in Nanoporous Shale

Proceedings of the 3rd Unconventional Resources Technology Conference ◽

10.15530/urtec-2015-2172738 ◽

2015 ◽

Cited By ~ 1

Author(s):

William R. Welch ◽

Mohammad Piri

Keyword(s):

Molecular Dynamics ◽

Retrograde Condensation ◽