Cloning and Characterization of a High-Copy-Number Novel Insertion Sequence from ChemolithotrophicThiobacillus ferrooxidans

Plasmid ◽  
1997 ◽  
Vol 38 (2) ◽  
pp. 129-134 ◽  
Author(s):  
Ranadhir Chakraborty ◽  
Chirajyoti Deb ◽  
Anuradha Lohia ◽  
Pradosh Roy
Genetics ◽  
2003 ◽  
Vol 164 (2) ◽  
pp. 685-697 ◽  
Author(s):  
Edward K Kentner ◽  
Michael L Arnold ◽  
Susan R Wessler

Abstract The Louisiana iris species Iris brevicaulis and I. fulva are morphologically and karyotypically distinct yet frequently hybridize in nature. A group of high-copy-number TY3/gypsy-like retrotransposons was characterized from these species and used to develop molecular markers that take advantage of the abundance and distribution of these elements in the large iris genome. The copy number of these IRRE elements (for iris retroelement), is ∼1 × 105, accounting for ∼6–10% of the ∼10,000-Mb haploid Louisiana iris genome. IRRE elements are transcriptionally active in I. brevicaulis and I. fulva and their F1 and backcross hybrids. The LTRs of the elements are more variable than the coding domains and can be used to define several distinct IRRE subfamilies. Transposon display or S-SAP markers specific to two of these subfamilies have been developed and are highly polymorphic among wild-collected individuals of each species. As IRRE elements are present in each of 11 iris species tested, the marker system has the potential to provide valuable comparative data on the dynamics of retrotransposition in large plant genomes.


2002 ◽  
Vol 68 (8) ◽  
pp. 4136-4139 ◽  
Author(s):  
Ana Gomez ◽  
Monique Ladire ◽  
Francoise Marcille ◽  
Michelle Nardi ◽  
Michel Fons

ABSTRACT ISRgn1, an insertion sequence of the IS3 family, has been identified in the genome of a bacteriocin-negative mutant of Ruminococcus gnavus E1. The copy number of ISRgn1 in R. gnavus E1, as well as its distribution among phylogenetically E1-related strains, has been determined. Results obtained suggest that ISRgn1 is not indigenous to the R. gnavus phylogenetic group but that it can transpose in this bacterium.


Genetics ◽  
1995 ◽  
Vol 139 (4) ◽  
pp. 1777-1796 ◽  
Author(s):  
D Lisch ◽  
P Chomet ◽  
M Freeling

Abstract Most Mutator lines of maize harbor several different classes of Mu transposons, each of which may be present in high copy number. The regulatory element is also often found in high copy number, and it is this element's behavior that is presumed to cause the non-Mendelian inheritance of Mutator activity. Using a very simple Mutator line, we demonstrate tha MuDR-1, a regulator of the Mutator system, can functionally replace standard non-Mendelian Mutator activity and that MuDR-1 is associated with the loss of methylation of the termini of another Mu transposon. Further, we show that Mu transposons can transpose duplicatively, that reinsertion tends to be into unlinked sites, and that MuDR-1 frequently suffers deletions. Changes in chromosomal position and the mode of sexual transmission are shown to be associated with changes in the frequency of MuDR-1 duplication and with the activity of MuDR-1 as monitored by the excision frequency of a reporter transposon of the Mu family, Mu1. Our data are derived from a Minimal Mutator Line in which there are relatively few Mu transposons, including one MuDR-1 regulator and as few as one Mu1 reporter. The seemingly enigmatic results that have been obtained using more complicated Mu genotypes are reinterpreted using simple Mendelian principles. We have borrowed a gap-repair model from Drosophila biologists to explain both duplications and deletions of MuDR-1.


2007 ◽  
Vol 73 (12) ◽  
pp. 4094-4094 ◽  
Author(s):  
Ryan Fong ◽  
Jonathan A. Vroom ◽  
Zhihao Hu ◽  
C. Richard Hutchinson ◽  
Jianqiang Huang ◽  
...  

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