Model Setup and Procedures for Prediction of Enzyme Reaction Kinetics with QM-Only and QM:MM Approaches

Author(s):  
Michał Glanowski ◽  
Sangita Kachhap ◽  
Tomasz Borowski ◽  
Maciej Szaleniec
AIChE Journal ◽  
1976 ◽  
Vol 22 (5) ◽  
pp. 921-923 ◽  
Author(s):  
David B. Van Dongen ◽  
David O. Cooney

Author(s):  
Young Je Yoo ◽  
Yan Feng ◽  
Yong Hwan Kim ◽  
Camila Flor J. Yagonia

FEBS Letters ◽  
1977 ◽  
Vol 81 (1) ◽  
pp. 179-182 ◽  
Author(s):  
J.V. Watzon ◽  
S.H. Chambers ◽  
P. Workman ◽  
T.S. Horsnell

2007 ◽  
Vol 41 (1-2) ◽  
pp. 127-132 ◽  
Author(s):  
Dahai Yu ◽  
Zhi Wang ◽  
Yan Liu ◽  
Li Jin ◽  
Yueming Cheng ◽  
...  

1992 ◽  
Vol 263 (2) ◽  
pp. C294-C299 ◽  
Author(s):  
K. W. Rundell ◽  
P. C. Tullson ◽  
R. L. Terjung

AMP deaminase catalyzes the deamination of AMP to inosine 5'-monophosphate (IMP) and ammonia. Factors controlling the enzyme in muscle can rapidly promote high rates of IMP formation when ATP utilization exceeds supply. We evaluated whether binding of AMP deaminase to myosin, which occurs during intense contraction conditions, alters the kinetic behavior of the enzyme. Reaction kinetics of myosin-bound and free AMP deaminase were evaluated. Reaction kinetics of the free enzyme yielded a near-linear double-reciprocal plot with an expected Km of approximately 1 mM AMP concentration (AMP). In contrast, reaction kinetics of AMP deaminase became bimodal when bound to myosin. At [AMP] less than 0.15 mM, a high-affinity Km (0.05-0.10 mM) with maximal velocity approximately 20% that of free enzyme was evident. At [AMP] greater than 0.15 mM, the Km and maximal velocity values were similar to that of the free enzyme. The 10- to 20-fold higher affinity Km would allow for a higher rate of AMP deamination at the low [AMP] found physiologically. AMP deaminase binding to myosin also induced a marked resistance to orthophosphate inhibition (10 mM) in the presence of 50 microM ADP. Results were similar for purified preparations of AMP deaminase bound to myosin subfragment 2 and crude extracts obtained from contracting muscle. Our results add further support to the hypothesis that AMP deaminase binding to myosin serves an important role in control of enzyme activity in contracting muscle.


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