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Processing ChIP-Chip Data: From the Scanner to the Browser
Methods in Molecular Biology - Bioinformatics for Omics Data
◽
10.1007/978-1-61779-027-0_12
◽
2011
◽
pp. 251-268
◽
Cited By ~ 2
Author(s):
Pierre Cauchy
◽
Touati Benoukraf
◽
Pierre Ferrier
Keyword(s):
Chip Data
◽
Chip Chip
Download Full-text
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Cited By
References
Identifying biologically interpretable transcription factor knockout targets by jointly analyzing the transcription factor knockout microarray and the ChIP-chip data
BMC Systems Biology
◽
10.1186/1752-0509-6-102
◽
2012
◽
Vol 6
(1)
◽
pp. 102
◽
Cited By ~ 15
Author(s):
Tzu-Hsien Yang
◽
Wei-Sheng Wu
Keyword(s):
Transcription Factor
◽
Chip Data
◽
Chip Chip
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Analysis of ChIP-chip Data on Genome Tiling Microarrays
New Developments in Biostatistics and Bioinformatics - Frontiers of Statistics
◽
10.1142/9789812837448_0010
◽
2009
◽
pp. 239-257
Author(s):
W. Evan Johnson
◽
Jun S. Liu
◽
X. Shirley Liu
Keyword(s):
Chip Data
◽
Tiling Microarrays
◽
Chip Chip
Download Full-text
A highly efficient and effective motif discovery method for ChIP-seq/ChIP-chip data using positional information
Nucleic Acids Research
◽
10.1093/nar/gkr1135
◽
2011
◽
Vol 40
(7)
◽
pp. e50-e50
◽
Cited By ~ 21
Author(s):
Xiaotu Ma
◽
Ashwinikumar Kulkarni
◽
Zhihua Zhang
◽
Zhenyu Xuan
◽
Robert Serfling
◽
...
Keyword(s):
Motif Discovery
◽
Positional Information
◽
Chip Data
◽
Highly Efficient
◽
Discovery Method
◽
Chip Chip
Download Full-text
De novo identification of in vivo binding sites from ChIP-chip data
BMC Bioinformatics
◽
10.1186/1471-2105-9-s7-p24
◽
2008
◽
Vol 9
(S7)
◽
Author(s):
Victor Jin
◽
Alina Rabinovich
◽
Henny O'Geen
◽
Sushma Iyengar
◽
Peggy Farnham
Keyword(s):
Binding Sites
◽
De Novo
◽
Chip Data
◽
In Vivo Binding
◽
Chip Chip
Download Full-text
Metaanalysis of ChIP-chip Data
Plant Epigenetics - Methods in Molecular Biology
◽
10.1007/978-1-60761-646-7_14
◽
2010
◽
pp. 185-207
◽
Cited By ~ 1
Author(s):
Julia Engelhorn
◽
Franziska Turck
Keyword(s):
Chip Data
◽
Chip Chip
Download Full-text
An integrated workflow for analysis of ChIP-chip data
BioTechniques
◽
10.2144/000112819
◽
2008
◽
Vol 45
(2)
◽
pp. 131-140
◽
Cited By ~ 13
Author(s):
Karin Weigelt
◽
Christoph Moehle
◽
Thomas Stempfl
◽
Bernhard Weber
◽
Thomas Langmann
Keyword(s):
Chip Data
◽
Chip Chip
Download Full-text
Computational Reconstruction of Transcriptional Relationships from ChIP-Chip Data
IEEE/ACM Transactions on Computational Biology and Bioinformatics
◽
10.1109/tcbb.2012.102
◽
2013
◽
Vol 10
(2)
◽
pp. 300-307
Author(s):
Ngoc Tu Le
◽
Tu Bao Ho
◽
Bich Hai Ho
Keyword(s):
Chip Data
◽
Computational Reconstruction
◽
Chip Chip
Download Full-text
Identifying Combinatorial Transcription Factor Interactions with Microarray Data and ChIP-Chip Data
2008 2nd International Conference on Bioinformatics and Biomedical Engineering
◽
10.1109/icbbe.2008.61
◽
2008
◽
Author(s):
Ting Chen
◽
Feng Li
Keyword(s):
Transcription Factor
◽
Microarray Data
◽
Chip Data
◽
Factor Interactions
◽
Chip Chip
Download Full-text
Application of gene set enrichment method to ChIP-chip data analysis
2008 IEEE International Workshop on Genomic Signal Processing and Statistics
◽
10.1109/gensips.2008.4555684
◽
2008
◽
Author(s):
Yidong Chen
◽
Fan Yang
◽
Paul S. Meltzer
Keyword(s):
Data Analysis
◽
Gene Set Enrichment
◽
Enrichment Method
◽
Chip Data
◽
Gene Set
◽
Chip Chip
Download Full-text
Biological evaluation of biclustering algorithms using Gene Ontology and chIP-chip data
2008 IEEE International Conference on Acoustics, Speech and Signal Processing
◽
10.1109/icassp.2008.4517690
◽
2008
◽
Cited By ~ 3
Author(s):
Alain B. Tchagang
◽
Ahmed H. Tewfik
◽
Panayiotis V. Benos
Keyword(s):
Gene Ontology
◽
Biological Evaluation
◽
Chip Data
◽
Chip Chip
Download Full-text
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