Graph-Based Decomposition of Biochemical Reaction Networks into Monotone Subsystems

Lecture Notes in Computer Science - Algorithms in Bioinformatics ◽

10.1007/978-3-642-23038-7_13 ◽

2011 ◽

pp. 139-150 ◽

Cited By ~ 2

Author(s):

Hans-Michael Kaltenbach ◽

Simona Constantinescu ◽

Justin Feigelman ◽

Jörg Stelling

Keyword(s):

Biochemical Reaction ◽

Reaction Networks ◽

Biochemical Reaction Networks

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Minimal moment equations for stochastic models of biochemical reaction networks with partially finite state space

The Journal of Chemical Physics ◽

10.1063/1.4937937 ◽

2015 ◽

Vol 143 (24) ◽

pp. 244103 ◽

Cited By ~ 3

Author(s):

Jakob Ruess

Keyword(s):

State Space ◽

Stochastic Models ◽

Biochemical Reaction ◽

Reaction Networks ◽

Moment Equations ◽

Biochemical Reaction Networks ◽

Finite State ◽

Finite State Space

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A Dissipative Approach to the Identification of Biochemical Reaction Networks

IFAC Proceedings Volumes ◽

10.3182/20090706-3-fr-2004.00209 ◽

2009 ◽

Vol 42 (10) ◽

pp. 1259-1264

Author(s):

Dirk Fey ◽

Eric Bullinger

Keyword(s):

Biochemical Reaction ◽

Reaction Networks ◽

Biochemical Reaction Networks

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Model reduction and parameter estimation of non-linear dynamical biochemical reaction networks

IET Systems Biology ◽

10.1049/iet-syb.2015.0034 ◽

2016 ◽

Vol 10 (1) ◽

pp. 10-16 ◽

Cited By ~ 7

Author(s):

Xiaodian Sun ◽

Mario Medvedovic

Keyword(s):

Parameter Estimation ◽

Model Reduction ◽

Biochemical Reaction ◽

Reaction Networks ◽

Biochemical Reaction Networks ◽

Non Linear

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Robust ergodicity and tracking in antithetic integral control of stochastic biochemical reaction networks

2016 IEEE 55th Conference on Decision and Control (CDC) ◽

10.1109/cdc.2016.7798358 ◽

2016 ◽

Cited By ~ 2

Author(s):

Corentin Briat ◽

Mustafa Khammash

Keyword(s):

Biochemical Reaction ◽

Reaction Networks ◽

Biochemical Reaction Networks ◽

Integral Control

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Determining Elementary Modes of Functioning in Biochemical Reaction Networks at Steady State

Biomedical and Life Physics ◽

10.1007/978-3-322-85017-1_9 ◽

1996 ◽

pp. 101-114 ◽

Cited By ~ 5

Author(s):

S. Schuster ◽

C. Hilgetag ◽

R. Schuster

Keyword(s):

Steady State ◽

Biochemical Reaction ◽

Reaction Networks ◽

Biochemical Reaction Networks ◽

Elementary Modes

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Identification of Biochemical Reaction Networks Using a Parameter-Free Coordinate System

Control Theory and Systems Biology ◽

10.7551/mitpress/9780262013345.003.0014 ◽

2009 ◽

pp. 297-316 ◽

Cited By ~ 3

Author(s):

Dirk Fey ◽

Rolf Findeisen ◽

Eric Bullinger

Keyword(s):

Coordinate System ◽

Biochemical Reaction ◽

Reaction Networks ◽

Biochemical Reaction Networks

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Path mutual information for a class of biochemical reaction networks

2019 IEEE 58th Conference on Decision and Control (CDC) ◽

10.1109/cdc40024.2019.9029316 ◽

2019 ◽

Cited By ~ 1

Author(s):

Lorenzo Duso ◽

Christoph Zechner

Keyword(s):

Mutual Information ◽

Biochemical Reaction ◽

Reaction Networks ◽

Biochemical Reaction Networks

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A Novel Technique for Model Reduction of Biochemical Reaction Networks

IFAC-PapersOnLine ◽

10.1016/j.ifacol.2018.09.024 ◽

2018 ◽

Vol 51 (19) ◽

pp. 28-31 ◽

Cited By ~ 1

Author(s):

Manvel Gasparyan ◽

Arnout Van Messem ◽

Shodhan Rao

Keyword(s):

Model Reduction ◽

Biochemical Reaction ◽

Reaction Networks ◽

Biochemical Reaction Networks ◽

Novel Technique

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Evolutionary inference of biochemical reaction networks accelerated on graphics processing units

2013 International Conference on High Performance Computing & Simulation (HPCS) ◽

10.1109/hpcsim.2013.6641490 ◽

2013 ◽

Author(s):

Marco S. Nobile ◽

Giancarlo Mauri

Keyword(s):

Graphics Processing Units ◽

Biochemical Reaction ◽

Reaction Networks ◽

Biochemical Reaction Networks ◽

Evolutionary Inference ◽

Graphics Processing

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Saddle-node bifurcations in biochemical reaction networks with mass action kinetics and application to a double-phosphorylation mechanism

2007 American Control Conference ◽

10.1109/acc.2007.4282717 ◽

2007 ◽

Cited By ~ 3

Author(s):

Carsten Conradi ◽

Dietrich Flockerzi ◽

Jorg Raisch

Keyword(s):

Mass Action ◽

Biochemical Reaction ◽

Reaction Networks ◽

Biochemical Reaction Networks ◽

Mass Action Kinetics ◽

Saddle Node ◽

Phosphorylation Mechanism

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