Relationship Between Atomic Contact and Intermolecular Interactions: Significant Importance of Dispersion Interactions Between Molecules Without Short Atom–Atom Contact in Crystals

Author(s):  
Seiji Tsuzuki
Author(s):  
Suresh Suganya ◽  
Kandasamy Saravanan ◽  
Ramakrishnan Jaganathan ◽  
Poomani Kumaradhas

The intermolecular interactions and salt formation of acridine with 4-aminosalicylic acid, 5-chlorosalicylic acid and hippuric acid were investigated. The salts obtained were acridin-1-ium 4-aminosalicylate (4-amino-2-hydroxybenzoate), C13H10N+·C7H6NO3 − (I), acridin-1-ium 5-chlorosalicylate (5-chloro-2-hydroxybenzoate), C13H10N+·C7H4ClO3 − (II), and acridin-1-ium hippurate (2-benzamidoacetate) monohydrate, C13H10N+·C9H8NO3 −·H2O (III). Acridine is involved in strong intermolecular interactions with the hydroxy group of the three acids, enabling it to form supramolecular assemblies. Hirshfeld surfaces, fingerprint plots and enrichment ratios were generated and investigated, and the intermolecular interactions were analyzed, revealing their quantitative contributions in the crystal packing of salts I, II and III. A quantum theory of atoms in molecules (QTAIM) analysis shows the charge–density distribution of the intermolecular interactions. The isosurfaces of the noncovalent interactions were studied, which allows visualization of where the hydrogen-bonding and dispersion interactions contribute within the crystal.


Author(s):  
Akmaljon G. Tojiboev ◽  
Burkhon Zh. Elmuradov ◽  
Halima Mouhib ◽  
Kambarali K. Turgunov ◽  
Askar Sh. Abdurazakov ◽  
...  

The crystal structures of three mackinazolinone derivatives (2-amino-6,7,8,9-tetrahydro-11H-pyrido[2,1-b]quinazolin-11-one at room temperature, and 2-nitro-6,7,8,9-tetrahydro-11H-pyrido[2,1-b]quinazolin-11-one and N-(11-oxo-6,8,9,11-tetrahydro-7H-pyrido[2,1-b]quinazolin-2-yl)benzamide at 100 K) are explored using X-ray crystallography. To delineate the different intermolecular interactions and the respective interaction energies in the crystal architectures, energy framework analyses were carried out using the CE-B3LYP/6-31G(d,p) method implemented in the CrystalExplorer software. In the structures the different molecules are linked by C—H...O, C—H...N and N—H...O hydrogen bonds. Together with these hydrogen bonds, C—H...π and C—O...π interactions are involved in the formation of a three-dimensional crystal network. A Hirshfeld surface analysis allows the visualization of the two-dimensional fingerprint plots and the quantification of the contributions of H...H, H...C/C...H and H...O/O...H contacts throughout the different crystal structures. To obtain additional information on the intrinsic properties of our targets and to compare the experimental crystal structures with their respective conformations in the gas phase, quantum chemical calculations at the B3LYP-D3BJ/6-311++G(d,p) level of theory, including Grimme's D3 correction term and BJ damping functions, were carried out to account for intramolecular dispersion interactions. The identified energy gaps between the highest occupied and the lowest unoccupied molecular orbitals (HOMO–LUMO gap) of our targets in the gas phase and in two implicit solvents (methanol and dimethyl sulfoxide) allow us to quantify the impact of different substituents on the reactivity of mackinazolinone derivatives.


2016 ◽  
pp. 23-31
Author(s):  
M. M.-R. Gaidarov ◽  
A. D. Norov ◽  
A. M. Gaidarov ◽  
A. A. Hubbattov ◽  
I. A. Potapova

The article analyzes the intermolecular interactions in drilling fluids according to the conceptions of the supramolecular chemistry. Using the calculation method the values and the validity of orientation, induction and dispersion interactions in the formation of hydrogen bonds were obtained. It is shown that the interactions between the «nanoclay », multicharge, multifield and molecules of water lead to the formation of stable hydrogen bonds in the aqueous dispersion medium of the drilling fluid.


2017 ◽  
Vol 46 (28) ◽  
pp. 9227-9234 ◽  
Author(s):  
C. Ganesamoorthy ◽  
S. Heimann ◽  
S. Hölscher ◽  
R. Haack ◽  
C. Wölper ◽  
...  

Naph2Sb21shows intermolecular interactions in the solid state. Quantum chemical calculations of1and the lighter (P, As) and heavier (Bi) congeners showed that intermolecular E⋯E interactions (E = P, As, Sb, Bi) are dispersion dominated, while E⋯π interactions additionally contained a significant electrostatic contribution.


1998 ◽  
Vol 94 (3) ◽  
pp. 417-433 ◽  
Author(s):  
MARTIN VAN DER HOEF ◽  
PAUL MADDEN

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