Using the concept of Chou’s pseudo amino acid composition to predict protein subcellular localization: an approach by incorporating evolutionary information and von Neumann entropies

Amino Acids ◽

10.1007/s00726-007-0010-9 ◽

2007 ◽

Vol 34 (4) ◽

pp. 565-572 ◽

Author(s):

Shao-Wu Zhang ◽

Yun-Long Zhang ◽

Hui-Fang Yang ◽

Chun-Hui Zhao ◽

Quan Pan

Keyword(s):

Subcellular Localization ◽

Amino Acid Composition ◽

Acid Composition ◽

Evolutionary Information ◽

Protein Subcellular Localization ◽

Pseudo Amino Acid Composition ◽

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Prediction of Rat Protein Subcellular Localization with Pseudo Amino Acid Composition Based on Multiple Sequential Features

Protein and Peptide Letters ◽

10.2174/092986611795222768 ◽

2011 ◽

Vol 18 (6) ◽

pp. 625-633 ◽

Author(s):

Ruijia Shi ◽

Cunshuan Xu

Keyword(s):

Subcellular Localization ◽

Amino Acid Composition ◽

Acid Composition ◽

Protein Subcellular Localization ◽

Pseudo Amino Acid Composition

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Prediction of protein subcellular localization by support vector machines using multi-scale energy and pseudo amino acid composition

Amino Acids ◽

10.1007/s00726-006-0475-y ◽

2007 ◽

Vol 33 (1) ◽

pp. 69-74 ◽

Author(s):

J.-Y. Shi ◽

S.-W. Zhang ◽

Q. Pan ◽

Y.-M. Cheng ◽

J. Xie

Keyword(s):

Support Vector Machines ◽

Subcellular Localization ◽

Amino Acid Composition ◽

Acid Composition ◽

Support Vector ◽

Protein Subcellular Localization ◽

Pseudo Amino Acid Composition ◽

Multi Scale ◽

Vector Machines

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Predicting Viral Protein Subcellular Localization with Chou's Pseudo Amino Acid Composition and Imbalance-Weighted Multi-Label K-Nearest Neighbor Algorithm

Protein and Peptide Letters ◽

10.2174/092986612803216999 ◽

2012 ◽

Vol 19 (11) ◽

pp. 1163-1169 ◽

Author(s):

Jun-Zhe Cao ◽

Wen-Qi Liu ◽

Hong Gu

Keyword(s):

Subcellular Localization ◽

Amino Acid Composition ◽

Acid Composition ◽

Viral Protein ◽

Nearest Neighbor ◽

Protein Subcellular Localization ◽

K Nearest Neighbor ◽

Pseudo Amino Acid Composition ◽

K Nearest Neighbor Algorithm

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A novel method for predicting protein subcellular localization based on pseudo amino acid composition

BMB Reports ◽

10.5483/bmbrep.2010.43.10.670 ◽

2010 ◽

Vol 43 (10) ◽

pp. 670-676 ◽

Author(s):

Junwei Ma ◽

Hong Gu

Keyword(s):

Subcellular Localization ◽

Amino Acid Composition ◽

Acid Composition ◽

Protein Subcellular Localization ◽

Pseudo Amino Acid Composition ◽

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Predicting Protein Subcellular Localization by Pseudo Amino Acid Composition with a Segment-Weighted and Features-Combined Approach

Protein and Peptide Letters ◽

10.2174/092986611794927947 ◽

2011 ◽

Vol 18 (5) ◽

pp. 480-487 ◽

Author(s):

Wei Wang ◽

XingBo Geng ◽

Yongchao Dou ◽

Taigang Liu ◽

Xiaoqi Zheng

Keyword(s):

Subcellular Localization ◽

Amino Acid Composition ◽

Acid Composition ◽

Combined Approach ◽

Protein Subcellular Localization ◽

Pseudo Amino Acid Composition

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Using a Novel AdaBoost Algorithm and Chous Pseudo Amino Acid Composition for Predicting Protein Subcellular Localization

Protein and Peptide Letters ◽

10.2174/092986611797642797 ◽

2011 ◽

Vol 18 (12) ◽

pp. 1219-1225 ◽

Author(s):

Jie Lin ◽

Yan Wang

Keyword(s):

Subcellular Localization ◽

Amino Acid Composition ◽

Acid Composition ◽

Protein Subcellular Localization ◽

Pseudo Amino Acid Composition ◽

Adaboost Algorithm

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Amino Acid Composition Distribution: a Novel Sequence Representation for Prediction of Protein Subcellular Localization

2007 1st International Conference on Bioinformatics and Biomedical Engineering ◽

10.1109/icbbe.2007.33 ◽

2007 ◽

Author(s):

Jianyu Shi ◽

Shao-Wu Zhang ◽

Quan Pan ◽

Guo-Ping Zhou

Keyword(s):

Subcellular Localization ◽

Amino Acid Composition ◽

Acid Composition ◽

Protein Subcellular Localization ◽

Composition Distribution ◽

Sequence Representation

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MultiLoc: prediction of protein subcellular localization using N-terminal targeting sequences, sequence motifs and amino acid composition

Bioinformatics ◽

10.1093/bioinformatics/btl002 ◽

2006 ◽

Vol 22 (10) ◽

pp. 1158-1165 ◽

Author(s):

A. Hoglund ◽

P. Donnes ◽

T. Blum ◽

H.-W. Adolph ◽

O. Kohlbacher

Keyword(s):

Subcellular Localization ◽

Amino Acid Composition ◽

Acid Composition ◽

Sequence Motifs ◽

Protein Subcellular Localization

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Identifying Bacterial Virulent Proteins by Fusing a Set of Classifiers Based on Variants of Chou's Pseudo Amino Acid Composition and on Evolutionary Information

IEEE/ACM Transactions on Computational Biology and Bioinformatics ◽

10.1109/tcbb.2011.117 ◽

2012 ◽

Vol 9 (2) ◽

pp. 467-475 ◽

Author(s):

Loris Nanni ◽

Alessandra Lumini ◽

Dinesh Gupta ◽

Aarti Garg

Keyword(s):

Amino Acid Composition ◽

Acid Composition ◽

Evolutionary Information ◽

Pseudo Amino Acid Composition

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Discriminating bioluminescent proteins by incorporating average chemical shift and evolutionary information into the general form of Chou's pseudo amino acid composition

Journal of Theoretical Biology ◽

10.1016/j.jtbi.2013.06.003 ◽

2013 ◽

Vol 334 ◽

pp. 45-51 ◽

Author(s):

Guo-Liang Fan ◽

Qian-Zhong Li

Keyword(s):

Chemical Shift ◽

Amino Acid Composition ◽

Acid Composition ◽

Evolutionary Information ◽

Pseudo Amino Acid Composition

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