Maximum feasible subsystems of distance geometry constraints

A New Distance Geometry Method for Constructing Word and Sentence Vectors

Companion Proceedings of the Web Conference 2020 ◽

10.1145/3366424.3391267 ◽

2020 ◽

Author(s):

Leo Liberti

Keyword(s):

Distance Geometry ◽

Geometry Method

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A New Algorithm for the $$^K$$DMDGP Subclass of Distance Geometry Problems with Exact Distances

Algorithmica ◽

10.1007/s00453-021-00835-6 ◽

2021 ◽

Author(s):

Douglas S. Gonçalves ◽

Carlile Lavor ◽

Leo Liberti ◽

Michael Souza

Keyword(s):

Distance Geometry ◽

Distance Geometry Problems

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Unassigned distance geometry and molecular conformation problems

Journal of Global Optimization ◽

10.1007/s10898-021-01023-0 ◽

2021 ◽

Author(s):

Phil Duxbury ◽

Carlile Lavor ◽

Leo Liberti ◽

Luiz Leduino de Salles-Neto

Keyword(s):

Molecular Conformation ◽

Distance Geometry

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Combined procedure of distance geometry and restrained molecular dynamics techniques for protein structure determination from nuclear magnetic resonance data: Application to the DNA binding domain of lac repressor fromEscherichia coli

Proteins Structure Function and Bioinformatics ◽

10.1002/prot.340030402 ◽

1988 ◽

Vol 3 (4) ◽

pp. 209-218 ◽

Cited By ~ 52

Author(s):

J. de Vlieg ◽

R. M. Scheek ◽

W. F. van Gunsteren ◽

H. J. C. Berendsen ◽

R. Kaptein ◽

...

Keyword(s):

Molecular Dynamics ◽

Nuclear Magnetic Resonance ◽

Distance Geometry ◽

Protein Structure Determination ◽

Lac Repressor ◽

Dna Binding Domain ◽

Combined Procedure ◽

Magnetic Resonance Data ◽

Data Application ◽

Resonance Data

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A Geometric Buildup Algorithm for the Solution of the Distance Geometry Problem Using Least-Squares Approximation

Bulletin of Mathematical Biology ◽

10.1007/s11538-009-9431-9 ◽

2009 ◽

Vol 71 (8) ◽

pp. 1914-1933 ◽

Cited By ~ 12

Author(s):

Atilla Sit ◽

Zhijun Wu ◽

Yaxiang Yuan

Keyword(s):

Least Squares ◽

Distance Geometry ◽

Least Squares Approximation ◽

Geometry Problem ◽

Distance Geometry Problem

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A Branch-and-Prune algorithm for the Molecular Distance Geometry Problem

International Transactions in Operational Research ◽

10.1111/j.1475-3995.2007.00622.x ◽

2008 ◽

Vol 15 (1) ◽

pp. 1-17 ◽

Cited By ~ 78

Author(s):

Leo Liberti ◽

Carlile Lavor ◽

Nelson Maculan

Keyword(s):

Distance Geometry ◽

Molecular Distance Geometry ◽

Geometry Problem ◽

Branch And Prune Algorithm ◽

Distance Geometry Problem ◽

Branch And Prune

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Refined structure of melittin bound to perdeuterated dodeclylphoscholine micelles as studied by 2D-NMR and distance geometry calculation

Proteins Structure Function and Bioinformatics ◽

10.1002/prot.340090202 ◽

1991 ◽

Vol 9 (2) ◽

pp. 81-89 ◽

Cited By ~ 41

Author(s):

Teikichi Ikura ◽

Nobuhiro Gō ◽

Fuyuhiko Inagaki

Keyword(s):

Distance Geometry ◽

2D Nmr

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Determination of the three-dimensional solution structure of the antihypertensive and antiviral protein BDS-I from the sea anemone Anemonia sulcata: a study using nuclear magnetic resonance and hybrid distance geometry-dynamical simulated annealing

Biochemistry ◽

10.1021/bi00431a033 ◽

1989 ◽

Vol 28 (5) ◽

pp. 2188-2198 ◽

Cited By ~ 107

Author(s):

Paul C. Driscoll ◽

Angela M. Gronenborn ◽

Laszlo Beress ◽

G. Marius Clore

Keyword(s):

Nuclear Magnetic Resonance ◽

Simulated Annealing ◽

Solution Structure ◽

Distance Geometry ◽

Three Dimensional ◽

Antiviral Protein ◽

Dimensional Solution ◽

Anemonia Sulcata ◽

Hybrid Distance

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Improved convergence and speed for the distance geometry program APA to determine protein structure

Computers & Chemistry ◽

10.1016/s0097-8485(00)00084-x ◽

2001 ◽

Vol 25 (3) ◽

pp. 223-230 ◽

Cited By ~ 3

Author(s):

William Glunt ◽

Thomas Hayden

Keyword(s):

Protein Structure ◽

Distance Geometry

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Exploring Exhaustively the Conformations of a Tandem Domains Protein using a Discrete Distance Geometry Approach

Biophysical Journal ◽

10.1016/j.bpj.2020.11.1764 ◽

2021 ◽

Vol 120 (3) ◽

pp. 277a

Author(s):

Florence Cordier ◽

Benjamin Bardiaux ◽

Antonio Mucherino ◽

Jerome Idier ◽

Nicolas Wolff ◽

...

Keyword(s):

Distance Geometry

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