Semi-supervised learning of the hidden vector state model for extracting protein–protein interactions

Artificial Intelligence in Medicine ◽

10.1016/j.artmed.2007.07.004 ◽

2007 ◽

Vol 41 (3) ◽

pp. 209-222 ◽

Author(s):

Deyu Zhou ◽

Yulan He ◽

Chee Keong Kwoh

Keyword(s):

Supervised Learning ◽

Protein Interactions ◽

State Model ◽

Vector State ◽

Protein Protein Interactions

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Semi-supervised Learning of the Hidden Vector State Model for Protein-Protein Interactions Extraction

2007 IEEE Symposium on Computational Intelligence and Data Mining ◽

10.1109/cidm.2007.368941 ◽

2007 ◽

Author(s):

Deyu Zhou ◽

Yulan He ◽

Chee Keong Kwoh

Keyword(s):

Supervised Learning ◽

Protein Interactions ◽

State Model ◽

Vector State ◽

Protein Protein Interactions

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Ontology-Based Protein-Protein Interactions Extraction from Literature Using the Hidden Vector State Model

10.1109/icdmw.2008.11 ◽

2008 ◽

Author(s):

Yulan He ◽

Keiichi Nakata ◽

Deyu Zhou

Keyword(s):

Protein Interactions ◽

State Model ◽

Vector State ◽

Protein Protein Interactions

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Extracting Protein-Protein Interactions from MEDLINE using the Hidden Vector State model

International Journal of Bioinformatics Research and Applications ◽

10.1504/ijbra.2008.017164 ◽

2008 ◽

Vol 4 (1) ◽

pp. 64 ◽

Author(s):

Deyu Zhou ◽

Yulan He ◽

Chee Keong Kwoh

Keyword(s):

Protein Interactions ◽

State Model ◽

Vector State ◽

Protein Protein Interactions

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Extracting Protein-Protein Interactions from the Literature Using the Hidden Vector State Model

Computational Science – ICCS 2006 - Lecture Notes in Computer Science ◽

10.1007/11758525_97 ◽

2006 ◽

pp. 718-725 ◽

Author(s):

Deyu Zhou ◽

Yulan He ◽

Chee Keong Kwoh

Keyword(s):

Protein Interactions ◽

State Model ◽

Vector State ◽

Protein Protein Interactions

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Predicting protein-protein interactions by a supervised learning classifier

Computational Biology and Chemistry ◽

10.1016/j.compbiolchem.2004.07.003 ◽

2004 ◽

Vol 28 (4) ◽

pp. 291-301 ◽

Keyword(s):

Supervised Learning ◽

Protein Interactions ◽

Protein Protein Interactions ◽

Learning Classifier

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Feature‐based classification of native and non‐native protein–protein interactions: Comparing supervised and semi‐supervised learning approaches

10.1002/pmic.201100217 ◽

2011 ◽

Vol 11 (22) ◽

pp. 4321-4330 ◽

Author(s):

Nan Zhao ◽

Bin Pang ◽

Chi‐Ren Shyu ◽

Dmitry Korkin

Keyword(s):

Supervised Learning ◽

Protein Interactions ◽

Learning Approaches ◽

Native Protein ◽

Protein Protein Interactions ◽

Feature Based ◽

Feature Based Classification

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An accurate classification of native and non-native protein-protein interactions using supervised and semi-supervised learning approaches

2010 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) ◽

10.1109/bibm.2010.5706560 ◽

2010 ◽

Author(s):

Nan Zhao ◽

Bin Pang ◽

Chi-Ren Shyu ◽

Dmitry Korkin

Keyword(s):

Supervised Learning ◽

Protein Interactions ◽

Learning Approaches ◽

Native Protein ◽

Protein Protein Interactions

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Determining Effects of Non-synonymous SNPs on Protein-Protein Interactions using Supervised and Semi-supervised Learning

PLoS Computational Biology ◽

10.1371/journal.pcbi.1003592 ◽

2014 ◽

Vol 10 (5) ◽

pp. e1003592 ◽

Author(s):

Nan Zhao ◽

Jing Ginger Han ◽

Chi-Ren Shyu ◽

Dmitry Korkin

Keyword(s):

Supervised Learning ◽

Protein Interactions ◽

Protein Protein Interactions ◽

Synonymous Snps

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Spot protein-protein interactions... fast

PSI Structural Genomics Knowledgebase ◽

10.1038/th_psisgkb.2010.08 ◽

2010 ◽

Author(s):

Maria Hodges

Keyword(s):

Protein Interactions ◽

Protein Protein Interactions

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Combination of chemical cross-linking and pull-down assay to study transient protein-protein interactions

Protocol Exchange ◽

10.1038/nprot.2006.297 ◽

2006 ◽

Author(s):

Feng Gong ◽

Deirdre Fahy ◽

Michael J. Smerdon

Keyword(s):

Protein Interactions ◽

Cross Linking ◽

Protein Protein Interactions ◽

Chemical Cross Linking

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