Microalgal metabolic engineering strategies for the production of fuels and chemicals

2021 ◽  
pp. 126529
Author(s):  
Nam Kyu Kang ◽  
Kwangryul Baek ◽  
Hyun Gi Koh ◽  
Christine Anne Atkinson ◽  
Donald R. Ort ◽  
...  
Author(s):  
Barbara Bourgade ◽  
Nigel P Minton ◽  
M Ahsanul Islam

ABSTRACT Unabated mining and utilisation of petroleum and petroleum resources and their conversion to essential fuels and chemicals have drastic environmental consequences, contributing to global warming and climate change. In addition, fossil fuels are finite resources, with a fast-approaching shortage. Accordingly, research efforts are increasingly focusing on developing sustainable alternatives for chemicals and fuels production. In this context, bioprocesses, relying on microorganisms, have gained particular interest. For example, acetogens use the Wood-Ljungdahl pathway to grow on single carbon C1-gases (CO2 and CO) as their sole carbon source and produce valuable products such as acetate or ethanol. These autotrophs can, therefore, be exploited for large-scale fermentation processes to produce industrially relevant chemicals from abundant greenhouse gases. In addition, genetic tools have recently been developed to improve these chassis organisms through synthetic biology approaches. This review will focus on the challenges of genetically and metabolically modifying acetogens. It will first discuss the physical and biochemical obstacles complicating successful DNA transfer in these organisms. Current genetic tools developed for several acetogens, crucial for strain engineering to consolidate and expand their catalogue of products, will then be described. Recent tool applications for metabolic engineering purposes to allow redirection of metabolic fluxes or production of non-native compounds will lastly be covered.


2010 ◽  
Vol 2010 ◽  
pp. 1-18 ◽  
Author(s):  
Laura R. Jarboe ◽  
Xueli Zhang ◽  
Xuan Wang ◽  
Jonathan C. Moore ◽  
K. T. Shanmugam ◽  
...  

Production of fuels and chemicals through microbial fermentation of plant material is a desirable alternative to petrochemical-based production. Fermentative production of biorenewable fuels and chemicals requires the engineering of biocatalysts that can quickly and efficiently convert sugars to target products at a cost that is competitive with existing petrochemical-based processes. It is also important that biocatalysts be robust to extreme fermentation conditions, biomass-derived inhibitors, and their target products. Traditional metabolic engineering has made great advances in this area, but synthetic biology has contributed and will continue to contribute to this field, particularly with next-generation biofuels. This work reviews the use of metabolic engineering and synthetic biology in biocatalyst engineering for biorenewable fuels and chemicals production, such as ethanol, butanol, acetate, lactate, succinate, alanine, and xylitol. We also examine the existing challenges in this area and discuss strategies for improving biocatalyst tolerance to chemical inhibitors.


Green ◽  
2011 ◽  
Vol 1 (1) ◽  
Author(s):  
Leqian Liu ◽  
Ben Reed ◽  
Hal Alper

AbstractConcerns about the availability of petroleum-derived fuels and chemicals have led to the exploration of metabolically engineered organisms as novel hosts for biofuels and chemicals production. However, the complexity inherent in metabolic and regulatory networks makes this undertaking a complex task. To address these limitations, metabolic engineering has adapted a wide-variety of tools for altering phenotypes. In this review, we will highlight traditional and recent metabolic engineering tools for optimizing cells including pathway-based, global, and genomics enabled approaches. Specifically, we describe these tools as well as provide demonstrations of their effectiveness in optimizing biofuels production. However, each of these tools provides stepping stones towards the grand goal of biofuels production. Thus, developing methods for largescale cellular optimization and integrative approaches are invaluable for further cell optimization. This review highlights the challenges that still must be met to accomplish this goal.


2015 ◽  
Vol 30 ◽  
pp. 105-120 ◽  
Author(s):  
S. Eric Nybo ◽  
Nymul E. Khan ◽  
Benjamin M. Woolston ◽  
Wayne R. Curtis

2013 ◽  
Vol 24 (3) ◽  
pp. 398-404 ◽  
Author(s):  
Jens Nielsen ◽  
Christer Larsson ◽  
Antonius van Maris ◽  
Jack Pronk

mSystems ◽  
2021 ◽  
Author(s):  
Dmitry A. Rodionov ◽  
Irina A. Rodionova ◽  
Vladimir A. Rodionov ◽  
Aleksandr A. Arzamasov ◽  
Ke Zhang ◽  
...  

To develop functional metabolic engineering platforms for nonmodel microorganisms, a comprehensive understanding of the physiological and metabolic characteristics is critical. Caldicellulosiruptor bescii and other species in this genus have untapped potential for conversion of unpretreated plant biomass into industrial fuels and chemicals. The highly interactive and complex machinery used by C. bescii to acquire and process complex carbohydrates contained in lignocellulose was elucidated here to complement related efforts to develop a metabolic engineering platform with this bacterium.


2021 ◽  
Author(s):  
Kaspar Valgepea ◽  
Gert Talbo ◽  
Nobuaki Takemori ◽  
Ayako Takemori ◽  
Christina Ludwig ◽  
...  

Microbes that can recycle one-carbon (C1) greenhouse gases into fuels and chemicals are vital for the biosustainability of future industries. Acetogens are the most efficient known microbes for fixing carbon oxides CO2 and CO. Understanding proteome allocation is important for metabolic engineering as it dictates metabolic fitness. Here, we use absolute proteomics to quantify intracellular concentrations for >1,000 proteins in the model-acetogen Clostridium autoethanogenum grown on three gas mixtures. We detect prioritisation of proteome allocation for C1 fixation and significant expression of proteins involved in the production of acetate and ethanol as well as proteins with unclear functions. The data also revealed which isoenzymes are important. Integration of proteomic and metabolic flux data demonstrated that enzymes catalyse high fluxes with high concentrations and high in vivo catalytic rates. We show that flux adjustments were dominantly accompanied with changing enzyme catalytic rates rather than concentrations. Our work serves as a reference dataset and advances systems-level understanding and engineering of acetogens.


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