A Petri nets-based framework for whole-cell modeling

Biosystems ◽  
2021 ◽  
pp. 104533
Author(s):  
Fei Liu ◽  
George Assaf ◽  
Ming Chen ◽  
Monika Heiner
Keyword(s):  
Petri Nets ◽  
Whole Cell ◽  
Cell Modeling

The principles of whole-cell modeling

2015 ◽  
Vol 27 ◽  
pp. 18-24 ◽  
Author(s):  
Jonathan R Karr ◽  
Koichi Takahashi ◽  
Akira Funahashi
Keyword(s):  
Whole Cell ◽  
Cell Modeling

scholarly journals Whole Cell Modeling: From Single Cells to Colonies

2014 ◽  
Vol 54 (8-9) ◽  
pp. 1219-1229 ◽  
Author(s):  
John A. Cole ◽  
Zaida Luthey-Schulten
Keyword(s):  
Single Cells ◽  
Whole Cell ◽  
Cell Modeling

The E. coli Whole-Cell Modeling Project

EcoSal Plus ◽  
2021 ◽  
Author(s):  
Gwanggyu Sun ◽  
Travis A. Ahn-Horst ◽  
Markus W. Covert
Keyword(s):  
Computational Model ◽  
Model Organism ◽  
Current Version ◽  
Whole Cell ◽  
Content Type ◽  
E Coli ◽  
Cell Modeling

The Escherichia coli whole-cell modeling project seeks to create the most detailed computational model of an E. coli cell in order to better understand and predict the behavior of this model organism. Details about the approach, framework, and current version of the model are discussed.

scholarly journals Towards a whole-cell modeling approach for synthetic biology

2013 ◽  
Vol 23 (2) ◽  
pp. 025112 ◽  
Author(s):  
Oliver Purcell ◽  
Bonny Jain ◽  
Jonathan R. Karr ◽  
Markus W. Covert ◽  
Timothy K. Lu
Keyword(s):  
Synthetic Biology ◽  
Whole Cell ◽  
Modeling Approach ◽  
Cell Modeling

scholarly journals The future of whole-cell modeling

2014 ◽  
Vol 28 ◽  
pp. 111-115 ◽  
Author(s):  
Derek N Macklin ◽  
Nicholas A Ruggero ◽  
Markus W Covert
Keyword(s):  
Whole Cell ◽  
Cell Modeling ◽  
The Future

scholarly journals Toward Community Standards and Software for Whole-Cell Modeling

2016 ◽  
Vol 63 (10) ◽  
pp. 2007-2014 ◽  
Author(s):  
Dagmar Waltemath ◽  
Jonathan R. Karr ◽  
Frank T. Bergmann ◽  
Vijayalakshmi Chelliah ◽  
Michael Hucka ◽  
...  
Keyword(s):  
Whole Cell ◽  
Cell Modeling ◽  
Community Standards
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