scholarly journals Substrate Binding at the Qo-Site of the Bacterial Cytochrome bc1 Complex Predicted by Atomistic Molecular Dynamics Simulations

2013 ◽  
Vol 104 (2) ◽  
pp. 490a
Author(s):  
Pekka A. Postila ◽  
Karol Kaszuba ◽  
Marcin Sarewicz ◽  
Artur Osyczka ◽  
Ilpo Vattulainen ◽  
...  
Keyword(s):  
Molecular Dynamics ◽  
Molecular Dynamics Simulations ◽  
Substrate Binding ◽  
Cytochrome Bc1 ◽  
Bc1 Complex ◽  
Cytochrome Bc1 Complex ◽  
Qo Site ◽  
Dynamics Simulations

A molecular dynamics study of the complete binding process of meropenem to New Delhi metallo-β-lactamase 1

2018 ◽  
Vol 20 (9) ◽  
pp. 6409-6420 ◽  
Author(s):  
Juan Duan ◽  
Chuncai Hu ◽  
Jiafan Guo ◽  
Lianxian Guo ◽  
Jia Sun ◽  
...  
Keyword(s):  
Molecular Dynamics ◽  
Molecular Dynamics Simulations ◽  
Substrate Binding ◽  
New Delhi ◽  
Binding Process ◽  
Dynamics Simulations

We have investigated the substrate-binding pathways of NDM-1 via unbiased molecular dynamics simulations and metadynamics.

Probing the Cytochrome bc1 Complex Qo Site Mechanism Using Weak Binding Inhibitors.

1998 ◽  
pp. 1521-1524
Author(s):  
R. Eryl Sharp ◽  
Aimee Palmitessa ◽  
Brian R. Gibney ◽  
Jennifer L. White ◽  
Jason T. Wan ◽  
...  
Keyword(s):  
Cytochrome Bc1 ◽  
Bc1 Complex ◽  
Cytochrome Bc1 Complex ◽  
Weak Binding ◽  
Qo Site ◽  
Binding Inhibitors

Ubiquinone Pair in the Qo Site Central to the Primary Energy Conversion Reactions of Cytochrome bc1 Complex

Biochemistry ◽  
1995 ◽  
Vol 34 (49) ◽  
pp. 15979-15996 ◽  
Author(s):  
Huangen Ding ◽  
Christopher C. Moser ◽  
Dan E. Robertson ◽  
Mariko K. Tokito ◽  
Fevzi Daldal ◽  
...  
Keyword(s):  
Energy Conversion ◽  
Primary Energy ◽  
Cytochrome Bc1 ◽  
Bc1 Complex ◽  
Cytochrome Bc1 Complex ◽  
Qo Site

Cytochrome bc1 complex [2Fe-2S] cluster and its interaction with ubiquinone and ubihydroquinone at the Qo site: a double-occupancy Qo site model

Biochemistry ◽  
1992 ◽  
Vol 31 (12) ◽  
pp. 3144-3158 ◽  
Author(s):  
Huangen Ding ◽  
Dan E. Robertson ◽  
Fevzi Daldal ◽  
P. Leslie Dutton
Keyword(s):  
Cytochrome Bc1 ◽  
Bc1 Complex ◽  
Cytochrome Bc1 Complex ◽  
Double Occupancy ◽  
Site Model ◽  
Qo Site
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