scholarly journals Accurate Estimation of Protein-Binding Kinetics using Markov State Models

2019 ◽  
Vol 116 (3) ◽  
pp. 303a
Author(s):  
Youngchan Kim ◽  
Tiara A. Maula ◽  
Jeetain Mittal
Keyword(s):  
Protein Binding ◽  
Binding Kinetics ◽  
Accurate Estimation ◽  
Markov State ◽  
Markov State Models ◽  
State Models ◽  
Protein Binding Kinetics

scholarly journals Accurate Estimation of Protein Folding and Unfolding Times: Beyond Markov State Models

2016 ◽  
Vol 12 (8) ◽  
pp. 3473-3481 ◽  
Author(s):  
Ernesto Suárez ◽  
Joshua L. Adelman ◽  
Daniel M. Zuckerman
Keyword(s):  
Protein Folding ◽  
Accurate Estimation ◽  
Markov State ◽  
Markov State Models ◽  
State Models

scholarly journals Thermodynamics and kinetics of the amyloid-β peptide revealed by Markov state models based on MD data in agreement with experiment

2021 ◽  
Author(s):  
Arghadwip Paul ◽  
Suman Samantray ◽  
Marco Anteghini ◽  
Mohammed Khaled ◽  
Birgit Strodel
Keyword(s):  
Amyloid Β ◽  
Md Simulations ◽  
Amyloid Β Peptide ◽  
Intrinsically Disordered ◽  
Thermodynamics And Kinetics ◽  
Markov State ◽  
Markov State Models ◽  
State Models ◽  
Kinetics Of

The convergence of MD simulations is tested using varying measures for the intrinsically disordered amyloid-β peptide (Aβ). Markov state models show that 20–30 μs of MD is needed to reliably reproduce the thermodynamics and kinetics of Aβ.

scholarly journals Nanofluidic Fluorescence Microscopy (NFM) for real-time monitoring of protein binding kinetics and affinity studies

2017 ◽  
Vol 88 ◽  
pp. 25-33 ◽  
Author(s):  
Pattamon Teerapanich ◽  
Martine Pugnière ◽  
Corinne Henriquet ◽  
Yii-Lih Lin ◽  
Chia-Fu Chou ◽  
...  
Keyword(s):  
Fluorescence Microscopy ◽  
Protein Binding ◽  
Real Time ◽  
Binding Kinetics ◽  
Real Time Monitoring ◽  
Protein Binding Kinetics
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