Spectral clustering on protein-protein interaction networks via constructing affinity matrix using attributed graph embedding

Computers in Biology and Medicine ◽

10.1016/j.compbiomed.2021.104933 ◽

2021 ◽

pp. 104933

Author(s):

Kamal Berahmand ◽

Elahe Nasiri ◽

Rojiar Pir mohammadiani ◽

Yuefeng Li

Keyword(s):

Protein Interaction ◽

Spectral Clustering ◽

Graph Embedding ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Affinity Matrix ◽

Protein Protein Interaction ◽

Attributed Graph ◽

Protein Protein Interaction Networks

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A Novel Link Prediction Algorithm for Protein-Protein Interaction Networks by Attributed Graph Embedding

Computers in Biology and Medicine ◽

10.1016/j.compbiomed.2021.104772 ◽

2021 ◽

pp. 104772

Author(s):

Elahe Nasiri ◽

Kamal Berahmand ◽

Mehrdad Rostami ◽

Mohammad Dabiri

Keyword(s):

Protein Interaction ◽

Link Prediction ◽

Graph Embedding ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Prediction Algorithm ◽

Protein Protein Interaction ◽

Attributed Graph ◽

Protein Protein Interaction Networks

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Multiway spectral clustering link prediction in protein-protein interaction networks

Proceedings of the 10th IEEE International Conference on Information Technology and Applications in Biomedicine ◽

10.1109/itab.2010.5687767 ◽

2010 ◽

Author(s):

Nantia Iakovidou ◽

Panagiotis Symeonidis ◽

Yannis Manolopoulos

Keyword(s):

Protein Interaction ◽

Spectral Clustering ◽

Link Prediction ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Protein Protein Interaction ◽

Protein Protein Interaction Networks

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Diffusion Model Based Spectral Clustering for Protein-Protein Interaction Networks

PLoS ONE ◽

10.1371/journal.pone.0012623 ◽

2010 ◽

Vol 5 (9) ◽

pp. e12623 ◽

Author(s):

Kentaro Inoue ◽

Weijiang Li ◽

Hiroyuki Kurata

Keyword(s):

Diffusion Model ◽

Protein Interaction ◽

Spectral Clustering ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Protein Protein Interaction ◽

Model Based ◽

Protein Protein Interaction Networks

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Faculty Opinions recommendation of Modular decomposition of protein-protein interaction networks.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.1020428.232579 ◽

2004 ◽

Author(s):

Ruedi Aebersold

Keyword(s):

Protein Interaction ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Modular Decomposition ◽

Protein Protein Interaction ◽

Protein Protein Interaction Networks

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Faculty Opinions recommendation of Integrating protein-protein interaction networks with phenotypes reveals signs of interactions.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.718178553.793487291 ◽

2013 ◽

Author(s):

Marc Therrien ◽

Dariel Ashton-Beaucage

Keyword(s):

Protein Interaction ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Protein Protein Interaction ◽

Protein Protein Interaction Networks

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Inferring Protein-Protein Interaction Networks From Mass Spectrometry-Based Proteomic Approaches: A Mini-Review

Computational and Structural Biotechnology Journal ◽

10.1016/j.csbj.2019.05.007 ◽

2019 ◽

Vol 17 ◽

pp. 805-811 ◽

Author(s):

Kumar Yugandhar ◽

Shagun Gupta ◽

Haiyuan Yu

Keyword(s):

Mass Spectrometry ◽

Protein Interaction ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Protein Protein Interaction ◽

Protein Protein Interaction Networks

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Better Link Prediction for Protein-Protein Interaction Networks

2020 IEEE 20th International Conference on Bioinformatics and Bioengineering (BIBE) ◽

10.1109/bibe50027.2020.00017 ◽

2020 ◽

Author(s):

Ho Yin Yuen ◽

Jesper Jansson

Keyword(s):

Protein Interaction ◽

Link Prediction ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Protein Protein Interaction ◽

Protein Protein Interaction Networks

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Is the intrinsic disorder of proteins the cause of the scale-free architecture of protein–protein interaction networks?

10.1002/pmic.200600455 ◽

2007 ◽

Vol 7 (6) ◽

pp. 961-964 ◽

Author(s):

Santiago Schnell ◽

Santo Fortunato ◽

Sourav Roy

Keyword(s):

Protein Interaction ◽

Intrinsic Disorder ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Protein Protein Interaction ◽

Protein Protein Interaction Networks

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On Identifying and Analyzing Significant Nodes in Protein-Protein Interaction Networks

2013 IEEE 13th International Conference on Data Mining Workshops ◽

10.1109/icdmw.2013.126 ◽

2013 ◽

Author(s):

Rohan Khazanchi ◽

Kathryn Dempsey ◽

Ishwor Thapa ◽

Hesham Ali

Keyword(s):

Protein Interaction ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Protein Protein Interaction ◽

Protein Protein Interaction Networks

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Establishing a protein-protein interaction networks for hypertrophic cardiomyopathy

Journal of Electrocardiology ◽

10.1016/j.jelectrocard.2010.12.114 ◽

2011 ◽

Vol 44 (2) ◽

pp. e47-e48

Author(s):

Chia-Chun Lu ◽

Ching-Shiun Chang ◽

Ming-Ju Tsai ◽

Yu-Shan Chen ◽

Yueh Chen ◽

...

Keyword(s):

Hypertrophic Cardiomyopathy ◽

Protein Interaction ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Protein Protein Interaction ◽

Protein Protein Interaction Networks

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