scholarly journals Automated tracing of filaments in 3D electron tomography reconstructions using Sculptor and Situs

2012 ◽  
Vol 178 (2) ◽  
pp. 121-128 ◽  
Author(s):  
Mirabela Rusu ◽  
Zbigniew Starosolski ◽  
Manuel Wahle ◽  
Alexander Rigort ◽  
Willy Wriggers
2007 ◽  
Vol 159 (3) ◽  
pp. 443-450 ◽  
Author(s):  
Dimitri Vanhecke ◽  
Daniel Studer ◽  
Matthias Ochs

Author(s):  
Huolin Xin ◽  
Sai Vishnubhotla ◽  
Ruoqian Lin

2019 ◽  
Vol 201 (16) ◽  
Author(s):  
Fereshteh Azari ◽  
Michael Radermacher ◽  
Keith P. Mintz ◽  
Teresa Ruiz

ABSTRACTBacterial adhesion to host tissues is considered the first and critical step of microbial infection. The extracellular matrix protein adhesin A (EmaA) is a collagen-binding adhesin of the periodontal pathogenAggregatibacter actinomycetemcomitans. Three 202-kDa EmaA monomers form antenna-like structures on the bacterial surface with the functional domain located at the apical end. The structure of the 30-nm functional domain has been determined by three-dimensional (3D) electron tomography and subvolume averaging. The region exhibits a complex architecture composed of three subdomains (SI to SIII) and a linker between subdomains SII and SIII. However, the molecular interaction between the adhesin receptor complexes has yet to be revealed. This study provides the first detailed 3D structure of reconstituted EmaA/collagen complexes obtained using 3D electron tomography and image processing techniques. The observed interactions of EmaA with collagen were not to whole, intact fibrils, but rather to individual collagen triple helices dissociated from the fibrils. The majority of the contacts with the EmaA functional domain encompassed subdomains SII and SIII and in some cases the tip of the apical domain, involving SI. These data suggest a multipronged mechanism for the interaction of Gram-negative bacteria with collagen.IMPORTANCEBacterial adhesion is a crucial step for bacterial colonization and infection. In recent years, the number of antibiotic-resistant strains has dramatically increased; therefore, there is a need to search for novel antimicrobial agents. Thus, great efforts are being devoted to develop a clear understanding of the bacterial adhesion mechanism for preventing infections. In host/pathogen interactions, once repulsive forces are overcome, adhesins recognize and tightly bind to specific receptors on the host cell or tissue components. Here, we present the first 3D structure of the interaction between the collagen-binding adhesin EmaA and collagen, which is critical for the development of endocarditis in humans.


2003 ◽  
Vol 36 (19) ◽  
pp. 6962-6966 ◽  
Author(s):  
Kazuhiro Yamauchi ◽  
Keiko Takahashi ◽  
Hirokazu Hasegawa ◽  
Hermis Iatrou ◽  
Nikos Hadjichristidis ◽  
...  

2011 ◽  
Vol 17 (S2) ◽  
pp. 690-691
Author(s):  
X Wang ◽  
R Lockwood ◽  
D Vick ◽  
A Meldrum ◽  
M Malac

Extended abstract of a paper presented at Microscopy and Microanalysis 2011 in Nashville, Tennessee, USA, August 7–August 11, 2011.


2016 ◽  
Vol 147 (4) ◽  
pp. 415-438 ◽  
Author(s):  
Carmen Ranftler ◽  
Claudia Meisslitzer-Ruppitsch ◽  
Josef Neumüller ◽  
Adolf Ellinger ◽  
Margit Pavelka

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