scholarly journals Novel method for detecting and quantifying phenol with transient response of glycolytic oscillations of synchronised yeast cells

2019 ◽  
Vol 22 ◽  
pp. 100259
Author(s):  
Grzegorz Pasternak ◽  
Martin M. Hanczyc
2015 ◽  
Vol 25 (6) ◽  
pp. 064606 ◽  
Author(s):  
Takashi Amemiya ◽  
Kouhei Obase ◽  
Naoki Hiramatsu ◽  
Kiminori Itoh ◽  
Kenichi Shibata ◽  
...  

Author(s):  
Peter Richard ◽  
Bas Teusink ◽  
Hans V. Westerhoff ◽  
Karel van Dam

FEBS Journal ◽  
2014 ◽  
Vol 281 (12) ◽  
pp. 2784-2793 ◽  
Author(s):  
Anna-Karin Gustavsson ◽  
David D. van Niekerk ◽  
Caroline B. Adiels ◽  
Bob Kooi ◽  
Mattias Goksör ◽  
...  

2000 ◽  
Vol 78 (3) ◽  
pp. 1087-1093 ◽  
Author(s):  
Martin Bier ◽  
Barbara M. Bakker ◽  
Hans V. Westerhoff

2005 ◽  
Vol 390 (3) ◽  
pp. 787-790 ◽  
Author(s):  
Stanley W. Botchway ◽  
Ignasi Barba ◽  
Randolf Jordan ◽  
Rebecca Harmston ◽  
Peter M. Haggie ◽  
...  

A novel method for the fluorescence detection of proteins in cells is described in the present study. Proteins are labelled by the selective biosynthetic incorporation of 5-hydroxytryptophan and the label is detected via selective two-photon excitation of the hydroxyindole and detection of its fluorescence emission at 340 nm. The method is demonstrated in this paper with images of a labelled protein in yeast cells.


2020 ◽  
Vol 10 (1) ◽  
Author(s):  
André Weber ◽  
Werner Zuschratter ◽  
Marcus J. B. Hauser

AbstractThe transition between synchronized and asynchronous behaviour of immobilized yeast cells of the strain Saccharomyces carlsbergensis was investigated by monitoring the autofluorescence of the coenzyme NADH. In populations of intermediate cell densities the individual cells remained oscillatory, whereas on the level of the cell population both a partially synchronized and an asynchronous state were accessible for experimental studies. In the partially synchronized state, the mean oscillatory frequency was larger than that of the cells in the asynchronous state. This suggests that synchronisation occurred due to entrainment by the cells that oscillated more rapidly. This is typical for synchronisation due to phase advancement. Furthermore, the synchronisation of the frequency of the glycolytic oscillations preceded the synchronisation of their phases. However, the cells did not synchronize completely, as the distribution of the oscillatory frequencies only narrowed but did not collapse to a unique frequency. Cells belonging to spatially denser clusters showed a slightly enhanced local synchronisation during the episode of partial synchronisation. Neither the clusters nor a transition from partially synchronized glycolytic oscillations to travelling glycolytic waves did substantially affect the degree of partial synchronisation. Chimera states, i.e., the coexistence of a synchronized and an asynchronous part of the population, could not be found.


1991 ◽  
Vol 99 (2) ◽  
pp. 325-334 ◽  
Author(s):  
M.A. Aon ◽  
S. Cortassa ◽  
H.V. Westerhoff ◽  
J.A. Berden ◽  
E Van Spronsen ◽  
...  

The control exerted in vivo by mitochondrial functions on the dynamics of glycolysis was investigated in starved yeast cells that were metabolizing glucose semianaerobically. Glycolytic oscillations were triggered after a pulse of glucose by inhibition of mitochondrial respiration with KCN, myxothiazol and antimycin A or in mutants in the bc1 complex (ubiquinol:cytochrome c reductase) that were largely deficient in respiratory capacity. Inhibition of the adenine nucleotide translocator by preincubation with bongkrekic acid also triggered a train of damped sinusoidal oscillations after glucose addition. The oscillations consisted of cycles of reduction and oxidation of the intracellular pool of nicotinamide nucleotides with periods of 45 s to 1 min and amplitudes of 0.8 mM or lower. Preincubation with the uncoupler carbonyl cyamide p-(trifluoromethoxy)phenylhydrazone (FCCP) annihilated cyanide-induced oscillations of NAD(P)H. Evidence for de-energization of mitochondrial membranes in vivo was obtained by mitochondrial staining with dimethylaminostyryl-methyl-pyridiniumiodine (DASPMI) of starved cells. The low rates of NADH reoxidation shown by respiratory mutants and the FCCP-treated X2180 strain open up the possibility that mitochondrial dehydrogenases also control glycolytic oscillations. Low rates of cytosolic NADH reoxidation induced by pyrazole, an inhibitor of alcohol dehydrogenase, were also associated with the disappearance of glycolytic oscillations. From experimental evidence and model calculations we conclude that the modulation of the levels of cytosolic ATP by mitochondrial functions in turn modulates the approach of the dynamic behavior of glycolysis to an oscillatory domain. The mitochondrial NADH dehydrogenase and the glycolytic steps associated with NADH reoxidation downstream from pyruvate appear to provide another control level of glycolysis dynamics in vivo.


Author(s):  
Mehrdad Mokhtari ◽  
Zulkurnain Abdul-Malek ◽  
Chin Leong Wooi

<span>The effect of frequency dependent soil properties on the impedance and transient response of the grounding electrode was investigated. The frequency dependent soil models as proposed by Scott, Smith-Longmire, and Visacro-Alipio were critically reviewed. A novel method was proposed to integrate the frequency dependent soil electrical properties in the circuit model of grounding electrode. To validate the application of the method in circuit model, the voltage responses of the grounding electrode obtained by the circuit and electromagnetic models were compared. The voltage responses obtained by the circuit and electromagnetic models were in excellent agreement in terms of voltage peaks and wave shapes. The differences between voltage peaks obtained by the circuit and electromagnetic models were found less than 1%.</span>


FEBS Journal ◽  
2012 ◽  
Vol 279 (16) ◽  
pp. 2837-2847 ◽  
Author(s):  
Anna-Karin Gustavsson ◽  
David D. van Niekerk ◽  
Caroline B. Adiels ◽  
Franco B. du Preez ◽  
Mattias Goksör ◽  
...  

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