Phylogeny of Decapoda using two nuclear protein-coding genes: Origin and evolution of the Reptantia

2008 ◽  
Vol 48 (1) ◽  
pp. 359-368 ◽  
Author(s):  
L.M. Tsang ◽  
K.Y. Ma ◽  
S.T. Ahyong ◽  
T.-Y. Chan ◽  
K.H. Chu
2005 ◽  
Vol 34 (1) ◽  
pp. 147-158 ◽  
Author(s):  
Jerome C. Regier ◽  
Heather M. Wilson ◽  
Jeffrey W. Shultz

2011 ◽  
Vol 61 (3) ◽  
pp. 628-638 ◽  
Author(s):  
Jenny Knapp ◽  
Minoru Nakao ◽  
Tetsuya Yanagida ◽  
Munehiro Okamoto ◽  
Urmas Saarma ◽  
...  

eLife ◽  
2015 ◽  
Vol 4 ◽  
Author(s):  
Christopher E Laumer ◽  
Andreas Hejnol ◽  
Gonzalo Giribet

Flatworms number among the most diverse invertebrate phyla and represent the most biomedically significant branch of the major bilaterian clade Spiralia, but to date, deep evolutionary relationships within this group have been studied using only a single locus (the rRNA operon), leaving the origins of many key clades unclear. In this study, using a survey of genomes and transcriptomes representing all free-living flatworm orders, we provide resolution of platyhelminth interrelationships based on hundreds of nuclear protein-coding genes, exploring phylogenetic signal through concatenation as well as recently developed consensus approaches. These analyses robustly support a modern hypothesis of flatworm phylogeny, one which emphasizes the primacy of the often-overlooked ‘microturbellarian’ groups in understanding the major evolutionary transitions within Platyhelminthes: perhaps most notably, we propose a novel scenario for the interrelationships between free-living and vertebrate-parasitic flatworms, providing new opportunities to shed light on the origins and biological consequences of parasitism in these iconic invertebrates.


BMC Biology ◽  
2021 ◽  
Vol 19 (1) ◽  
Author(s):  
Liping Yan ◽  
Thomas Pape ◽  
Karen Meusemann ◽  
Sujatha Narayanan Kutty ◽  
Rudolf Meier ◽  
...  

Abstract Background Blowflies are ubiquitous insects, often shiny and metallic, and the larvae of many species provide important ecosystem services (e.g., recycling carrion) and are used in forensics and debridement therapy. Yet, the taxon has repeatedly been recovered to be para- or polyphyletic, and the lack of a well-corroborated phylogeny has prevented a robust classification. Results We here resolve the relationships between the different blowfly subclades by including all recognized subfamilies in a phylogenomic analysis using 2221 single-copy nuclear protein-coding genes of Diptera. Maximum likelihood (ML), maximum parsimony (MP), and coalescent-based phylogeny reconstructions all support the same relationships for the full data set. Based on this backbone phylogeny, blowflies are redefined as the most inclusive monophylum within the superfamily Oestroidea not containing Mesembrinellidae, Mystacinobiidae, Oestridae, Polleniidae, Sarcophagidae, Tachinidae, and Ulurumyiidae. The constituent subfamilies are re-classified as Ameniinae (including the Helicoboscinae, syn. nov.), Bengaliinae, Calliphorinae (including Aphyssurinae, syn. nov., Melanomyinae, syn. nov., and Toxotarsinae, syn. nov.), Chrysomyinae, Luciliinae, Phumosiinae, Rhiniinae stat. rev., and Rhinophorinae stat. rev. Metallic coloration in the adult is shown to be widespread but does not emerge as the most likely ground plan feature. Conclusions Our study provides the first phylogeny of oestroid calyptrates including all blowfly subfamilies. This allows settling a long-lasting controversy in Diptera by redefining blowflies as a well-supported monophylum, and blowfly classification is adjusted accordingly. The archetypical blowfly trait of carrion-feeding maggots most likely evolved twice, and the metallic color may not belong to the blowfly ground plan.


MycoKeys ◽  
2019 ◽  
Vol 47 ◽  
pp. 17-33 ◽  
Author(s):  
Alica Košuthová ◽  
Martin Westberg ◽  
Mónica A.G. Otálora ◽  
Mats Wedin

Here, we test the current generic delimitation of Rostania (Collemataceae, Peltigerales, Ascomycota) utilizing molecular phylogeny and morphological investigations. Using DNA sequence data from the mitochondrial SSU rDNA and two nuclear protein-coding genes (MCM7 and β-tubulin) and utilizing parsimony, maximum likelihood and Bayesian phylogenetic methods, Rostania is shown to be non-monophyletic in the current sense. A new generic delimitation of Rostania is thus proposed, in which the genus is monophyletic, and three species (Rostaniacoccophylla, R.paramensis, R.quadrifida) are excluded and transferred to other genera. Rostaniaoccultata is further non-monophyletic, and a more detailed investigation of species delimitations in Rostania s. str. is needed. The new combinations Leptogiumparamense and Scytiniumquadrifidum are proposed.


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