[29] Identification of functional residues and secondary structure from protein multiple sequence alignment

Methods in Enzymology - Computer Methods for Macromolecular Sequence Analysis ◽

10.1016/s0076-6879(96)66031-5 ◽

1996 ◽

pp. 497-512 ◽

Author(s):

Craig D. Livingstone ◽

Geoffrey J. Barton

Keyword(s):

Secondary Structure ◽

Sequence Alignment ◽

Multiple Sequence Alignment ◽

Multiple Sequence ◽

Protein Multiple Sequence Alignment

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Protein multiple sequence alignment based on secondary structure similarity

2013 International Conference on Advances in Computing, Communications and Informatics (ICACCI) ◽

10.1109/icacci.2013.6637352 ◽

2013 ◽

Author(s):

Sarvenaz Hamidi ◽

Mahmoud Naghibzadeh ◽

Javad Sadri

Keyword(s):

Secondary Structure ◽

Sequence Alignment ◽

Multiple Sequence Alignment ◽

Multiple Sequence ◽

Structure Similarity ◽

Protein Multiple Sequence Alignment

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MSACompro: protein multiple sequence alignment using predicted secondary structure, solvent accessibility, and residue-residue contacts

BMC Bioinformatics ◽

10.1186/1471-2105-12-472 ◽

2011 ◽

Vol 12 (1) ◽

Author(s):

Xin Deng ◽

Jianlin Cheng

Keyword(s):

Secondary Structure ◽

Sequence Alignment ◽

Multiple Sequence Alignment ◽

Solvent Accessibility ◽

Multiple Sequence ◽

Residue Contacts ◽

Protein Multiple Sequence Alignment

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Protein Multiple Sequence Alignment Benchmarking through Secondary Structure Prediction

Bioinformatics ◽

10.1093/bioinformatics/btw840 ◽

2017 ◽

pp. btw840 ◽

Author(s):

Quan Le ◽

Fabian Sievers ◽

Desmond G. Higgins

Keyword(s):

Secondary Structure ◽

Sequence Alignment ◽

Multiple Sequence Alignment ◽

Structure Prediction ◽

Secondary Structure Prediction ◽

Multiple Sequence ◽

Protein Multiple Sequence Alignment

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Real value prediction of solvent accessibility in proteins using multiple sequence alignment and secondary structure

Proteins Structure Function and Bioinformatics ◽

10.1002/prot.20630 ◽

2005 ◽

Vol 61 (2) ◽

pp. 318-324 ◽

Author(s):

Aarti Garg ◽

Harpreet Kaur ◽

G.P.S. Raghava

Keyword(s):

Secondary Structure ◽

Sequence Alignment ◽

Multiple Sequence Alignment ◽

Solvent Accessibility ◽

Multiple Sequence ◽

Value Prediction ◽

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PRALINE: a multiple sequence alignment toolbox that integrates homology-extended and secondary structure information

Nucleic Acids Research ◽

10.1093/nar/gki390 ◽

2005 ◽

Vol 33 (Web Server) ◽

pp. W289-W294 ◽

Author(s):

V. A. Simossis ◽

J. Heringa

Keyword(s):

Secondary Structure ◽

Sequence Alignment ◽

Multiple Sequence Alignment ◽

Secondary Structure Information ◽

Multiple Sequence ◽

Structure Information

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A unified statistical model of protein multiple sequence alignment integrating direct coupling and insertions

Biophysics and Physicobiology ◽

10.2142/biophysico.13.0_45 ◽

2016 ◽

Vol 13 (0) ◽

pp. 45-62 ◽

Author(s):

Akira R. Kinjo

Keyword(s):

Statistical Model ◽

Sequence Alignment ◽

Multiple Sequence Alignment ◽

Direct Coupling ◽

Multiple Sequence ◽

Protein Multiple Sequence Alignment

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A Quality Assessment of Protein Multiple Sequence Alignment Techniques

2020 International Conference on Contemporary Computing and Applications (IC3A) ◽

10.1109/ic3a48958.2020.233267 ◽

2020 ◽

Author(s):

Arunima Mishra ◽

B K Tripathi ◽

Sudhir singh Soam

Keyword(s):

Quality Assessment ◽

Sequence Alignment ◽

Multiple Sequence Alignment ◽

Multiple Sequence ◽

Protein Multiple Sequence Alignment

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Integrating Protein Secondary Structure Prediction and Multiple Sequence Alignment

Current Protein and Peptide Science ◽

10.2174/1389203043379675 ◽

2004 ◽

Vol 5 (4) ◽

pp. 249-266 ◽

Author(s):

V. Simossis ◽

J. Heringa

Keyword(s):

Secondary Structure ◽

Sequence Alignment ◽

Multiple Sequence Alignment ◽

Structure Prediction ◽

Secondary Structure Prediction ◽

Protein Secondary Structure ◽

Protein Secondary Structure Prediction ◽

Multiple Sequence

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Protein multiple sequence alignment by hybrid bio-inspired algorithms

Nucleic Acids Research ◽

10.1093/nar/gkq1052 ◽

2010 ◽

Vol 39 (6) ◽

pp. 1980-1992 ◽

Author(s):

V. Cutello ◽

G. Nicosia ◽

M. Pavone ◽

I. Prizzi

Keyword(s):

Sequence Alignment ◽

Multiple Sequence Alignment ◽

Multiple Sequence ◽

Protein Multiple Sequence Alignment

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A Novel Comparative Sequence Analysis Method for ncRNA Secondary Structure Prediction without Multiple Sequence Alignment

2008 Fourth International Conference on Natural Computation ◽

10.1109/icnc.2008.446 ◽

2008 ◽

Author(s):

Quan Zou ◽

Mao-Zu Guo ◽

Yang Liu ◽

Zhi-An Xing

Keyword(s):

Sequence Analysis ◽

Secondary Structure ◽

Sequence Alignment ◽

Multiple Sequence Alignment ◽

Structure Prediction ◽

Secondary Structure Prediction ◽

Comparative Sequence Analysis ◽

Analysis Method ◽

Multiple Sequence ◽

Comparative Sequence

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