scholarly journals Ribosomal DNA and chloroplast DNA polymorphisms in a mixed stand of Quercus robur and Q petraea

1993 ◽  
Vol 50 (Supplement) ◽  
pp. 41s-47s ◽  
Author(s):  
RJ Petit ◽  
DB Wagner ◽  
A Kremer
Author(s):  
Vladimir E. Padutov

Pedunculate oak (Quercus robur L.) is one of the main forest forming species in the Republic of Belarus. Its population genetic structure was formed under the influence of various migration processes. Six chloroplast DNA loci (µdt1, µdt3, µdt4, µcd4, µcd5 and µkk4) were used for the genogeographic study. The material for the analysis was collected in 100 oak forest stands (2325 samples); 18 allelic variants were identified, which are grouped into 17 different combinations (haplotypes). Five of them are widespread (the proportion of occurrence varies from 7 to 48 %, totalling 85 %). The remaining 12 are rare (the proportion of occurrence varies from 1 to 3 %, totalling 15 %). Phylogenetic trees constructed using the nearest neighbour and maximum likelihood methods show the presence of two groups (branches) of haplotypes. One of it comprises 8 variants including 2 dominant haplotypes and the other comprises 9 variants including 3 dominant haplotypes. PCR-RFLP analysis of chloroplast DNA showed that the pedunculate oak in Belarus originates from the Balkan refugium. Haplotype No. 1 (µdt189, µdt3123, µdt4142, µcd494, µcd574, µkk4109) is found almost everywhere in Belarus with the exception of the southwest and northeast, while haplotype No. 8 (µdt189, µdt3121, µdt4142, µcd494, µcd574, µkk4109) is mainly localised in the southwest and northeast. Haplotypes No. 3 (µdt189, µdt3120, µdt4141, µcd494, µcd575, µkk4109) and No. 7 (µdt189, µdt3122, µdt4142, µcd494, µcd574, µkk4109) predominantly found in the west of the country. Haplotype No. 2 (µdt190, µdt3120, µdt4141, µcd495, µcd574, µkk4109) is typical for the southeast.


2013 ◽  
Vol 26 (3) ◽  
pp. 233 ◽  
Author(s):  
Alexander N. Schmidt-Lebuhn

The reciprocal monophyly of Craspedia and Pycnosorus (Asteraceae, Gnaphalieae) is tested, with a phylogenetic analysis of ribosomal and chloroplast DNA. Although one species of the latter genus was not sampled, the results of the present study indicated that it is most likely monophyletic as opposed to paraphyletic with respect to Craspedia. Within Craspedia, deeper sampling results in the appearance of several species (C. aurantia, C. coolaminica, C. glabrata and C. variabilis) in both major Australian rDNA clades, indicating that the available molecular phylogenies have to be considered gene trees instead of species phylogenies. Additional studies using more independent loci and species-tree approaches are needed to resolve species relationships in the genus.


2002 ◽  
Vol 106 (2) ◽  
pp. 215-221 ◽  
Author(s):  
Thakurdas Saha ◽  
Arun Kumar ◽  
Minimol Ravindran ◽  
C. Kuruvilla Jacob ◽  
Bindu Roy ◽  
...  

1987 ◽  
Vol 84 (7) ◽  
pp. 2097-2100 ◽  
Author(s):  
D. B. Wagner ◽  
G. R. Furnier ◽  
M. A. Saghai-Maroof ◽  
S. M. Williams ◽  
B. P. Dancik ◽  
...  

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