scholarly journals Comparative genomics of Physcomitrella patens gametophytic transcriptome and Arabidopsis thaliana: Implication for land plant evolution

2003 ◽  
Vol 100 (13) ◽  
pp. 8007-8012 ◽  
Author(s):  
T. Nishiyama ◽  
T. Fujita ◽  
T. Shin-I ◽  
M. Seki ◽  
H. Nishide ◽  
...  
Keyword(s):  
Arabidopsis Thaliana ◽  
Comparative Genomics ◽  
Physcomitrella Patens ◽  
Land Plant ◽  
Plant Evolution ◽  
Land Plant Evolution

scholarly journals Peculiar Evolutionary History of miR390-Guided TAS3-Like Genes in Land Plants

2013 ◽  
Vol 2013 ◽  
pp. 1-14 ◽  
Author(s):  
Maria S. Krasnikova ◽  
Denis V. Goryunov ◽  
Alexey V. Troitsky ◽  
Andrey G. Solovyev ◽  
Lydmila V. Ozerova ◽  
...  
Keyword(s):  
Genomic Dna ◽  
Physcomitrella Patens ◽  
Land Plant ◽  
Plant Evolution ◽  
Marchantia Polymorpha ◽  
History Of ◽  
Molecular Machinery ◽  
Specific Mrnas ◽  
Land Plant Evolution ◽  
Phylogenetic Profiling

PCR-based approach was used as a phylogenetic profiling tool to probe genomic DNA samples from representatives of evolutionary distant moss taxa, namely, classes Bryopsida, Tetraphidopsida, Polytrichopsida, Andreaeopsida, and Sphagnopsida. We found relatives of allPhyscomitrella patensmiR390 and TAS3-like loci in these plant taxa excluding Sphagnopsida. Importantly, cloning and sequencing ofMarchantia polymorphagenomic DNA showed miR390 and TAS3-like sequences which were also found among genomic reads ofM. polymorphaat NCBI database. Our data suggest that the ancient plant miR390-dependent TAS molecular machinery firstly evolved to target AP2-like mRNAs in Marchantiophyta and only then both ARF- and AP2-specific mRNAs in mosses. The presented analysis shows that moss TAS3 families may undergone losses of tasiAP2 sites during evolution toward ferns and seed plants. These data confirm that miR390-guided genes coding for ARF- and AP2-specific ta-siRNAs have been gradually changed during land plant evolution.

scholarly journals Molecular Diversity of miR390-Guided Transacting siRNA Precursor Genes in Lower Land Plants: Experimental Approach and Bioinformatics Analysis

Sequencing ◽  
2011 ◽  
Vol 2011 ◽  
pp. 1-6 ◽  
Author(s):  
M. S. Krasnikova ◽  
I. A. Milyutina ◽  
V. K. Bobrova ◽  
A. V. Troitsky ◽  
A. G. Solovyev ◽  
...  
Keyword(s):  
Genomic Dna ◽  
Molecular Diversity ◽  
Experimental Approach ◽  
Physcomitrella Patens ◽  
Bioinformatics Analysis ◽  
Gene Families ◽  
Land Plant ◽  
Plant Evolution ◽  
Land Plant Evolution ◽  
Phylogenetic Profiling

Transacting siRNA loci (TAS3-like) of a particular plant species are usually represented by several gene families. PCR-based approach was used as a phylogenetic profiling tool to probe genomic DNA samples from representatives of evolutionary distant Bryophyta taxa, namely, class Bryopsida (subclasses Bryidae and Dicranidae) and class Sphagnopsida. We found relatives of all four Physcomitrella patens (subclass Funariidae) TAS3-like loci in subclasses Bryidae and Dicranidae. Only representatives of subclass Bryidae encoded TAS3-like genes belonging to P. patens TAS3a and TAS3d families. On the other hand, only the members of order Grimmiales (subclass Dicranidae) encoded gene relatives of P. patens TAS3c family. These data indicate that moss ta-siRNA families have been long conserved during land plant evolution. However, P. patens TAS3-like loci were detected neither in two Sphagnum species from the earliest diverged moss class Sphagnopsida, nor in the Selaginella kraussiana from the earliest extant tracheophyta lineage, Lycopodiopsida.

Modeling the consequences of land plant evolution on silicate weathering

2019 ◽  
Vol 319 (1) ◽  
pp. 1-43 ◽  
Author(s):  
Daniel E. Ibarra ◽  
Jeremy K. Caves Rugenstein ◽  
Aviv Bachan ◽  
Andrés Baresch ◽  
Kimberly V. Lau ◽  
...  
Keyword(s):  
Land Plant ◽  
Plant Evolution ◽  
Silicate Weathering ◽  
Land Plant Evolution

scholarly journals The hornwort genome and early land plant evolution

Nature Plants ◽  
2020 ◽  
Vol 6 (2) ◽  
pp. 107-118 ◽  
Author(s):  
Jian Zhang ◽  
Xin-Xing Fu ◽  
Rui-Qi Li ◽  
Xiang Zhao ◽  
Yang Liu ◽  
...  
Keyword(s):  
Land Plant ◽  
Plant Evolution ◽  
Early Land Plant ◽  
Land Plant Evolution ◽  
Early Land
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