Unveiling Taxonomic Diversity and Functional Composition Differences of Microbial Mat Communities Through Comparative Metagenomics

2021 ◽  
pp. 1-10
Author(s):  
Gustavo Santoyo
2021 ◽  
Vol 908 (1) ◽  
pp. 012005
Author(s):  
E V Lavrentyeva ◽  
T G Banzaraktsaeva ◽  
V B Dambaev ◽  
A A Radnagurueva ◽  
L P Kozyreva

Abstract We studied the taxonomic diversity of microbial mat in the Uro hot spring (the Baikal rift zone, BRZ) with temperatures of 62°C (Ur-3) and 56°C (Ur-4). According to the results of high-throughput sequencing, the composition of the community is represented by various phylogenetic groups Cyanobacteria, Proteobacteria, Deinococcus-Thermus, Chloroflexi, Firmicutes, and Bacteroidetes involved in different stages of organic matter production and degradation in microbial mats. According to metagenomic analysis, there is a wide variety of natural peptidases, enhancing the potential of their specialised functions of energy and substance conversion in microbial mats.


2016 ◽  
Vol 27 (3-4) ◽  
pp. 47-54
Author(s):  
K. K. Holoborodko ◽  
V. O. Makhina ◽  
K. S. Buchnieva ◽  
O. E. Pakhomov

Floodplain valley of the Dnieper river midstream is a unique natural complex, having a great bìogeographical, ecological, environmental, historical and recreational values. In 1990, the Natural reserve «Dniprovsko-Orilsky» was established within the area. The Natural reserve «Dniprovsko-Orilsky» is environmentally protected site within the Dnipropetrovsk region, Dnipropetrovsk oblast, Ukraine. This reserve occupies part of the Dnieper river valley and marshy and reedy banks of Protovch river (existing bed of Oril river). It was created by Regulation of the Council of Ministers of the USSR of 15 September 1990, No. 262, based on common zoological and ornitological Nature reserves «Taromskì plavni» and «Obukhovskie zaplavy». On the territory of the Natural reserve «Dniprovsko-Orilsky», they were registered 32 Lepidoptera species listed in the List of Threatened Species at different categories (5 species in IUCN Red List ; 18 in Red Data Book of Ukraine; 7 in European Red List of plants and animals endangered on a global scale; 31 in Red Book of Dnipropetrovsk oblast). The main scientific materials were author’s collections from area of research and materials of entomological funds, Department of Zoology and Ecology, Oles Honchar Dnipropetrovsk National University (mostly Memorial Collection of V. O. Barsov). Field surveys covered all the ecosystems basic on size and degree of protection. The author’s researches have conducted over the past decade during annual expeditions to the Reserve. Taxonomic structure of the complex is quite diverse, and represented by all the major families of higher millers and rhopalocera, having protectedstatus. In relation to taxonomy, this complex formed by representatives of five superfamilies (Zyganoidea, Noctuoidea, Bombycoidea, Hesperioidea, Papilionoidea) from 11 families (Zygaenidae, Saturniidae, Sphingidae, Noctuidae Arctiidae Hesperiidae, Papilionidae, Pieridae, Nymphalidae, Satyridae, Lycaenidae). High taxonomic diversity can be explained by unique geographical location of the reserve in azonal conditions of the Dnieper river valley. Such location allows to enter different zoogeographic Lepidoptera groups on the reserve territory. Zoogeographic analysis of species protected within the reserve territory selected 7 basic groups. It was found that most of the globally rare species have Mediterranean origin (39 %); species of Palearctic origin are in second place (22 %); Western Palearctic and Ponto-Kazakh types of areas are same of number of species, and come third (11 %); and others come 17 % (European, Euro-Siberian, and Holarctic). This fauna component is specific due to presence of so-called «northern» species that make up 40 % (representatives of Palearctic, Western Palearctic, Euro-Siberian, European and Holarctic groups). Their existence within the reserve territory is only possible due to development of boreal valley ecosystems. High taxonomic diversity can be explained by unique geographical location of the reserve in azonal conditions of the Dnieper river valley. Such location allows to enter different zoogeographic Lepidoptera groups on the reserve territory. Zoogeographic analysis of species protected within the reserve territory selected 7 basic groups. It was found that most of the globally rare species have Mediterranean origin (39 %); species of Palearctic origin are in second place (22 %); Western Palearctic and Ponto-Kazakh types of areas are same of number of species, and come third (11 %); and others come 17 % (European, Euro-Siberian, and Holarctic). This fauna component is specific due to presence of so-called «northern» species that make up 40 % (representatives of Palearctic, Western Palearctic, Euro-Siberian, European and Holarctic groups). Their existence within the reserve territory is only possible due to development of boreal valley ecosystems.


Author(s):  
Mauro Gobbi ◽  
Valeria Lencioni

Carabid beetles and chironomid midges are two dominant cold-adapted taxa, respectively on glacier forefiel terrains and in glacial-stream rivers. Although their sensitivity to high altitude climate warming is well known, no studies compare the species assemblages exhibited in glacial systems. Our study compares diversity and distributional patterns of carabids and chironomids in the foreland of the receding Amola glacier in central-eastern Italian Alps. Carabids were sampled by pitfall traps; chironomids by kick sampling in sites located at the same distance from the glacier as the terrestrial ones. The distance from the glacier front was considered as a proxy for time since deglaciation since these variables are positively correlated. We tested if the distance from the glacier front affects: i) the species richness; ii) taxonomic diversity; and iii) species turnover. Carabid species richness and taxonomic diversity increased positively from recently deglaciated sites (those c. 160 m from the glacier front) to sites deglaciated more than 160yrs ago (those located >1300 m from glacier front). Species distributions along the glacier foreland were characterized by mutually exclusive species. Conversely, no pattern in chironomid species richness and turnover was observed. Interestingly, taxonomic diversity increased significantly: closely related species were found near the glacier front, while the most taxonomically diverse species assemblages were found distant from the glacier front. Increasing glacial retreat differently affect epigeic and aquatic insect taxa: carabids respond faster to glacier retreat than do chironomids, at least in species richness and species turnover patterns.


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