Faculty Opinions recommendation of Comparative metagenomics of microbial communities.

Author(s):  
Daniel Vaulot
Science ◽  
2005 ◽  
Vol 308 (5721) ◽  
pp. 554-557 ◽  
Author(s):  
S. G. Tringe

2010 ◽  
Vol 5 (3) ◽  
pp. 414-426 ◽  
Author(s):  
Wei Xie ◽  
Fengping Wang ◽  
Lei Guo ◽  
Zeling Chen ◽  
Stefan M Sievert ◽  
...  

2018 ◽  
Author(s):  
Daniel E. Ross ◽  
Daniel Lipus ◽  
Kelvin B. Gregory ◽  
Djuna Gulliver

Natural gas is a major source of global energy, and a large fraction is generated in subsurface coalbed deposits. Microbial communities within coalbed deposits impact methane production, and as a result contribute to global carbon cycling. The process of biogenic coal-to-methane conversion is not well understood. Here we demonstrate the first read- and assembly-based metagenome profiling of coal-associated formation waters, resulting in the recovery of over 40 metagenome-assembled genomes (MAGs) from eight individual coalbed methane wells in the Appalachian Basin. The majority of samples contained hydrogenotrophic methanogens, which were present in higher relative abundances than was previously reported for other coalbed basins. The abundance of Archaea and salinity were positively correlated, suggesting that salinity may be a controlling factor for biogenic coalbed methane. Low-abundance coalbed microbial populations were functionally diverse, while the most dominant organisms exhibit a high degree of genomic and functional similarities. Basin-specific pan-metagenome clustering suggests lower abundant and diverse bacterial communities are shaped by local basin parameters. Our analyses show Appalachian Basin coalbed microbial communities encode for the potential to convert coal into methane, which may be used as an indicator of potential biogenic methane production for future well performance and increased well longevity.


2010 ◽  
Author(s):  
Chris Hemme ◽  
Ye Deng ◽  
Qichao Tu ◽  
Matthew Fields ◽  
Terry Gentry ◽  
...  

2021 ◽  
Vol 12 ◽  
Author(s):  
Xin Wang ◽  
Gengan Du ◽  
Hong Chen ◽  
Xuejun Zeng ◽  
Bin Liu ◽  
...  

Fuzhuan brick tea (FBT) is a unique post-fermented tea product, naturally co-fermented by microorganisms, and has gained global popularity due to its potential health benefits for humans. Considerable efforts have been made toward elucidating the microbial diversity within FBT, but an understanding of the underlying FBT community interactions and functions remains poorly studied. Consequently, the microbial communities of two types of FBT, originating from Hunan and Shaanxi provinces, were investigated using comparative shotgun metagenomic sequencing and functional annotations. Metagenomic analysis indicated that two communities shared similar taxonomic and functional attributes. Two samples shared 486 genera, in which Pseudomonas contributed most to the abundant functions within the two samples. The carbohydrate active enzyme functions of the communities primarily comprised GH (32.92%), GT (26.8%), CEs (20.43%), and AAs (18.04%). Furthermore, the overall metabolic pathways encoded by the metagenomes were largely associated with carbohydrate and amino acid metabolism, with nine metabolic pathways that were differential between two groups including penicillin and cephalosporin biosynthesis. Significantly, a total of 35 potential probiotics were inferred, with Pseudomonas putida being the most abundant inferred probiotic (80%) within the FBT communities. This study provides new insights into FBT microbial communities on their potential functions and roles in FBT characteristics.


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