Improving performance and transferability of small mammal species distribution models

2018 ◽  
Vol 142 (2) ◽  
pp. 143-161
Author(s):  
Nerissa A. Haby ◽  
Steven Delean ◽  
Barry W. Brook
Mammalia ◽  
2021 ◽  
Vol 0 (0) ◽  
Author(s):  
Adrien André ◽  
Johan Michaux ◽  
Jorge Gaitan ◽  
Virginie Millien

Abstract Rapid climate change is currently altering species distribution ranges. Evaluating the long-term stress level in wild species undergoing range expansion may help better understanding how species cope with the changing environment. Here, we focused on the white-footed mouse (Peromyscus leucopus), a widespread small mammal species in North-America whose distribution range is rapidly shifting northward. We evaluated long-term stress level in several populations of P. leucopus in Quebec (Canada), from the northern edge of the species distribution to more core populations in Southern Quebec. We first tested the hypothesis that populations at the range margin are under higher stress than more established populations in the southern region of our study area. We then compared four measures of long-term stress level to evaluate the congruence between these commonly used methods. We did not detect any significant geographical trend in stress level across our study populations of P. leucopus. Most notably, we found no clear congruence between the four measures of stress level we used, and conclude that these four commonly used methods are not equivalent, thereby not comparable across studies.


2021 ◽  
Author(s):  
Dirk Nikolaus Karger ◽  
Bianca Saladin ◽  
Rafael O. Wueest ◽  
Catherine H. Graham ◽  
Damaris Zurell ◽  
...  

Aim: Climate is an essential element of species' niche estimates in many current ecological applications such as species distribution models (SDMs). Climate predictors are often used in the form of long-term mean values. Yet, climate can also be described as spatial or temporal variability for variables like temperature or precipitation. Such variability, spatial or temporal, offers additional insights into niche properties. Here, we test to what degree spatial variability and long-term temporal variability in temperature and precipitation improve SDM predictions globally. Location: Global. Time period: 1979-2013. Major taxa studies: Mammal, Amphibians, Reptiles. Methods: We use three different SDM algorithms, and a set of 833 amphibian, 779 reptile, and 2211 mammal species to quantify the effect of spatial and temporal climate variability in SDMs. All SDMs were cross-validated and accessed for their performance using the Area under the Curve (AUC) and the True Skill Statistic (TSS). Results: Mean performance of SDMs with climatic means as predictors was TSS=0.71 and AUC=0.90. The inclusion of spatial variability offers a significant gain in SDM performance (mean TSS=0.74, mean AUC=0.92), as does the inclusion of temporal variability (mean TSS=0.80, mean AUC=0.94). Including both spatial and temporal variability in SDMs shows similarly high TSS and AUC scores. Main conclusions: Accounting for temporal rather than spatial variability in climate improved the SDM prediction especially in exotherm groups such as amphibians and reptiles, while for endotermic mammals no such improvement was observed. These results indicate that more detailed information about temporal climate variability offers a highly promising avenue for improving niche estimates and calls for a new set of standard bioclimatic predictors in SDM research.


2021 ◽  
Vol 13 (8) ◽  
pp. 1495
Author(s):  
Jehyeok Rew ◽  
Yongjang Cho ◽  
Eenjun Hwang

Species distribution models have been used for various purposes, such as conserving species, discovering potential habitats, and obtaining evolutionary insights by predicting species occurrence. Many statistical and machine-learning-based approaches have been proposed to construct effective species distribution models, but with limited success due to spatial biases in presences and imbalanced presence-absences. We propose a novel species distribution model to address these problems based on bootstrap aggregating (bagging) ensembles of deep neural networks (DNNs). We first generate bootstraps considering presence-absence data on spatial balance to alleviate the bias problem. Then we construct DNNs using environmental data from presence and absence locations, and finally combine these into an ensemble model using three voting methods to improve prediction accuracy. Extensive experiments verified the proposed model’s effectiveness for species in South Korea using crowdsourced observations that have spatial biases. The proposed model achieved more accurate and robust prediction results than the current best practice models.


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