All-Atom Direct Folding Simulation for Proteins Using the Accelerated Molecular Dynamics in Implicit Solvent Model

2015 ◽  
Vol 32 (11) ◽  
pp. 118701 ◽  
Author(s):  
Zong-Chao Li ◽  
Li-Li Duan ◽  
Guo-Qiang Feng ◽  
Qing-Gang Zhang
Keyword(s):  
Molecular Dynamics ◽  
Implicit Solvent ◽  
Implicit Solvent Model ◽  
Accelerated Molecular Dynamics ◽  
Folding Simulation ◽  
Solvent Model

scholarly journals A Novel Implicit Solvent Model for Simulating the Molecular Dynamics of RNA

2013 ◽  
Vol 105 (5) ◽  
pp. 1248-1257 ◽  
Author(s):  
Yufeng Liu ◽  
Esmael Haddadian ◽  
Tobin R. Sosnick ◽  
Karl F. Freed ◽  
Haipeng Gong
Keyword(s):  
Molecular Dynamics ◽  
Implicit Solvent ◽  
Implicit Solvent Model ◽  
Solvent Model

Stability of membrane-induced self-assemblies of spherical nanoparticles

Soft Matter ◽  
2018 ◽  
Vol 14 (24) ◽  
pp. 5019-5030 ◽  
Author(s):  
Eric J. Spangler ◽  
P. B. Sunil Kumar ◽  
Mohamed Laradji
Keyword(s):  
Molecular Dynamics ◽  
Self Assembly ◽  
Lipid Membranes ◽  
The Self ◽  
Coarse Grained ◽  
Implicit Solvent ◽  
Spherical Nanoparticles ◽  
Implicit Solvent Model ◽  
Solvent Model ◽  
Dynamics Simulations

The self-assembly of spherical nanoparticles, resulting from their adhesion on tensionless lipid membranes, is investigated through molecular dynamics simulations of a coarse-grained implicit-solvent model for self-assembled lipid membranes.

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