Multiple sequence alignment by parallel simulated annealing

Bioinformatics ◽

10.1093/bioinformatics/9.3.267 ◽

1993 ◽

Vol 9 (3) ◽

pp. 267-273 ◽

Author(s):

Masato Ishikawa ◽

Tomoyuki Toya ◽

Masaki Hoshida ◽

Katsumi Nitta ◽

Atushi Ogiwara ◽

...

Keyword(s):

Simulated Annealing ◽

Sequence Alignment ◽

Multiple Sequence Alignment ◽

Multiple Sequence ◽

Parallel Simulated Annealing

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Differential evolution-simulated annealing for multiple sequence alignment

Journal of Physics Conference Series ◽

10.1088/1742-6596/893/1/012061 ◽

2017 ◽

Vol 893 ◽

pp. 012061 ◽

Author(s):

R C Addawe ◽

J M Addawe ◽

M R K Sueño ◽

J C Magadia

Keyword(s):

Simulated Annealing ◽

Differential Evolution ◽

Sequence Alignment ◽

Multiple Sequence Alignment ◽

Multiple Sequence

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Solving the multiple sequence alignment problem based on simulated annealing algorithm

Wuhan University Journal of Natural Sciences ◽

10.1007/bf02830302 ◽

2002 ◽

Vol 7 (2) ◽

pp. 144-144

Author(s):

Liang Shuang ◽

Mo Zhong-xi

Keyword(s):

Simulated Annealing ◽

Sequence Alignment ◽

Multiple Sequence Alignment ◽

Simulated Annealing Algorithm ◽

Multiple Sequence ◽

Alignment Problem ◽

Annealing Algorithm

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A simulated annealing algorithm for multiple sequence alignment with guaranteed accuracy

Third International Conference on Natural Computation (ICNC 2007) ◽

10.1109/icnc.2007.139 ◽

2007 ◽

Author(s):

Hongwei Huo ◽

Vojislav Stojkovic

Keyword(s):

Simulated Annealing ◽

Sequence Alignment ◽

Multiple Sequence Alignment ◽

Simulated Annealing Algorithm ◽

Multiple Sequence ◽

Guaranteed Accuracy ◽

Annealing Algorithm

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An algorithm of multiple sequence alignment based on consensus sequence searched by simulated annealing and star alignment

2015 International Symposium on Bioelectronics and Bioinformatics (ISBB) ◽

10.1109/isbb.2015.7344909 ◽

2015 ◽

Author(s):

Dengfeng Yao ◽

Minghu Jiang ◽

Xu You ◽

Abudoukelimu Abulizi ◽

Renkui Hou

Keyword(s):

Simulated Annealing ◽

Sequence Alignment ◽

Multiple Sequence Alignment ◽

Consensus Sequence ◽

Multiple Sequence

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Multiple sequence alignment using genetic algorithm and simulated annealing

Proceedings. 2004 International Conference on Information and Communication Technologies: From Theory to Applications, 2004. ◽

10.1109/ictta.2004.1307828 ◽

2004 ◽

Author(s):

M.F. Omar ◽

R.A. Salam ◽

N.A. Rashid ◽

R. Abdullah

Keyword(s):

Genetic Algorithm ◽

Simulated Annealing ◽

Sequence Alignment ◽

Multiple Sequence Alignment ◽

Multiple Sequence

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Parallel multiple sequence alignment with local phylogeny search by simulated annealing

Proceedings 20th IEEE International Parallel & Distributed Processing Symposium ◽

10.1109/ipdps.2006.1639536 ◽

2006 ◽

Author(s):

J. Zola ◽

D. Trystram ◽

A. Tchernykh ◽

C. Brizuela

Keyword(s):

Simulated Annealing ◽

Sequence Alignment ◽

Multiple Sequence Alignment ◽

Multiple Sequence

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Simulated annealing algorithm for the multiple sequence alignment problem: The approach of polymers in a random medium

Physical Review E ◽

10.1103/physreve.72.031915 ◽

2005 ◽

Vol 72 (3) ◽

Author(s):

M. Hernández-Guía ◽

R. Mulet ◽

S. Rodríguez-Pérez

Keyword(s):

Simulated Annealing ◽

Sequence Alignment ◽

Multiple Sequence Alignment ◽

Simulated Annealing Algorithm ◽

Random Medium ◽

Multiple Sequence ◽

Alignment Problem ◽

Annealing Algorithm

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MAUSA: Using Simulated Annealing for Guide Tree Construction in Multiple Sequence Alignment

AI 2007: Advances in Artificial Intelligence - Lecture Notes in Computer Science ◽

10.1007/978-3-540-76928-6_61 ◽

2007 ◽

pp. 599-608

Author(s):

P. J. Uren ◽

R. M. Cameron-Jones ◽

A. H. J. Sale

Keyword(s):

Simulated Annealing ◽

Sequence Alignment ◽

Multiple Sequence Alignment ◽

Multiple Sequence ◽

Tree Construction

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Multiple sequence alignment using simulated annealing

Bioinformatics ◽

10.1093/bioinformatics/10.4.419 ◽

1994 ◽

Vol 10 (4) ◽

pp. 419-426 ◽

Author(s):

Jin Kim ◽

Sakti Pramanik ◽

Moon Jung Chung

Keyword(s):

Simulated Annealing ◽

Sequence Alignment ◽

Multiple Sequence Alignment ◽

Multiple Sequence

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Multiple Sequence Alignment and Profile Analysis of Protein Family Utsing Hidden Markov Model

International Journal of Scientific Research ◽

10.15373/22778179/june2013/66 ◽

2012 ◽

Vol 2 (6) ◽

pp. 208-211

Author(s):

Navjot Kaur ◽

◽

Rajbir Singh Cheema ◽

Harmandeep Singh Harmandeep Singh

Keyword(s):

Markov Model ◽

Hidden Markov Model ◽

Sequence Alignment ◽

Multiple Sequence Alignment ◽

Profile Analysis ◽

Hidden Markov ◽

Protein Family ◽

Multiple Sequence

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