DeepGOPlus: improved protein function prediction from sequence

Faculty Opinions recommendation of Analysis of substructural variation in families of enzymatic proteins with applications to protein function prediction.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.3674970.3396073 ◽

2010 ◽

Author(s):

Christine Orengo

Keyword(s):

Protein Function ◽

Protein Function Prediction ◽

Function Prediction

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Mask blast with a new chemical logic of amino acids for improved protein function prediction

Proteins Structure Function and Bioinformatics ◽

10.1002/prot.26069 ◽

2021 ◽

Author(s):

Amita Pathak ◽

Toran Roy ◽

Avinash Edubilli ◽

Bhyravabhotla Jayaram

Keyword(s):

Amino Acids ◽

Protein Function ◽

Protein Function Prediction ◽

Function Prediction

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Integrated protein function prediction by mining function associations, sequences, and protein–protein and gene–gene interaction networks

Methods ◽

10.1016/j.ymeth.2015.09.011 ◽

2016 ◽

Vol 93 ◽

pp. 84-91 ◽

Cited By ~ 55

Author(s):

Renzhi Cao ◽

Jianlin Cheng

Keyword(s):

Protein Function ◽

Protein Function Prediction ◽

Gene Interaction ◽

Function Prediction ◽

Interaction Networks ◽

Gene Interaction Networks

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Hierarchical multi-label classification for protein function prediction: A local approach based on neural networks

2011 11th International Conference on Intelligent Systems Design and Applications ◽

10.1109/isda.2011.6121678 ◽

2011 ◽

Cited By ~ 7

Author(s):

Ricardo Cerri ◽

Rodrigo C. Barros ◽

Andre C. P. L. F. de Carvalho

Keyword(s):

Neural Networks ◽

Protein Function ◽

Protein Function Prediction ◽

Function Prediction ◽

Local Approach

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ProLanGO: Protein Function Prediction Using Neural Machine Translation Based on a Recurrent Neural Network

Molecules ◽

10.3390/molecules22101732 ◽

2017 ◽

Vol 22 (10) ◽

pp. 1732 ◽

Cited By ~ 84

Author(s):

Renzhi Cao ◽

Colton Freitas ◽

Leong Chan ◽

Miao Sun ◽

Haiqing Jiang ◽

...

Keyword(s):

Neural Network ◽

Machine Translation ◽

Recurrent Neural Network ◽

Protein Function ◽

Protein Function Prediction ◽

Function Prediction ◽

Neural Machine Translation

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Integration of relational and hierarchical network information for protein function prediction

BMC Bioinformatics ◽

10.1186/1471-2105-9-350 ◽

2008 ◽

Vol 9 (1) ◽

pp. 350 ◽

Cited By ~ 28

Author(s):

Xiaoyu Jiang ◽

Naoki Nariai ◽

Martin Steffen ◽

Simon Kasif ◽

Eric D Kolaczyk

Keyword(s):

Protein Function ◽

Protein Function Prediction ◽

Function Prediction ◽

Hierarchical Network ◽

Network Information

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Protein function prediction with high-throughput data

Amino Acids ◽

10.1007/s00726-008-0077-y ◽

2008 ◽

Vol 35 (3) ◽

pp. 517-530 ◽

Cited By ~ 26

Author(s):

Xing-Ming Zhao ◽

Luonan Chen ◽

Kazuyuki Aihara

Keyword(s):

High Throughput ◽

Protein Function ◽

Protein Function Prediction ◽

Function Prediction ◽

High Throughput Data

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“ PANNZER – a practical tool for protein function prediction”

Protein Science ◽

10.1002/pro.4193 ◽

2021 ◽

Author(s):

Petri Törönen ◽

Liisa Holm

Keyword(s):

Protein Function ◽

Protein Function Prediction ◽

Function Prediction ◽

Practical Tool

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Quantitative assessment of protein function prediction programs

Genetics and Molecular Research ◽

10.4238/2015.december.21.28 ◽

2015 ◽

Vol 14 (4) ◽

pp. 17555-17566 ◽

Cited By ~ 2

Author(s):

B.N. Rodrigues ◽

M.B.R. Steffens ◽

R.T. Raittz ◽

I.C.R. Santos-Weiss ◽

J.N. Marchaukoski

Keyword(s):

Protein Function ◽

Quantitative Assessment ◽

Protein Function Prediction ◽

Function Prediction

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Protein Function Prediction with Incomplete Annotations

IEEE/ACM Transactions on Computational Biology and Bioinformatics ◽

10.1109/tcbb.2013.142 ◽

2014 ◽

Vol 11 (3) ◽

pp. 579-591 ◽

Cited By ~ 20

Author(s):

Guoxian Yu ◽

Huzefa Rangwala ◽

Carlotta Domeniconi ◽

Guoji Zhang ◽

Zhiwen Yu

Keyword(s):

Protein Function ◽

Protein Function Prediction ◽

Function Prediction

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