scholarly journals How Family Histories Can Inform Research About Germ Cell Exposures: The Example of Autism

Author(s):  
Jill Escher

Abstract Throughout the scientific literature, heritable traits are routinely presumed to be genetic in origin. However, as emerging evidence from the realms of genetic toxicology and epigenomics demonstrate, heritability may be better understood as encompassing not only DNA sequence passed down through generations, but also disruptions to the parental germ cells causing de novo mutations or epigenetic alterations, with subsequent shifts in gene expression and functions in offspring. The Beyond Genes conference highlighted advances in understanding these aspects at molecular, experimental and epidemiological levels. In this commentary I suggest that future research on this topic could be inspired by collecting parents’ germ cell exposure histories, with particular attention to cases of families with multiple children suffering idiopathic disorders. In so doing I focus on the endpoint of autism spectrum disorders (ASD). Rates of this serious neurodevelopment disability have climbed around the world, a growing crisis that cannot be explained by diagnostic shifts. ASD’s strong heritability has prompted a research program largely focused on DNA sequencing to locate rare and common variants, but decades of this gene-focused research have revealed surprisingly little about the molecular origins of the disorder. Based on my experience as the mother of two children with idiopathic autism, and as a research philanthropist and autism advocate, I suggest ways researchers might probe parental germ cell exposure histories to develop new hypotheses that may ultimately reveal sources of non-genetic heritability in a subset of idiopathic heritable pathologies.

2015 ◽  
Vol 77 (9) ◽  
pp. 816-822 ◽  
Author(s):  
Alexandra Pinggera ◽  
Andreas Lieb ◽  
Bruno Benedetti ◽  
Michaela Lampert ◽  
Stefania Monteleone ◽  
...  

Nature ◽  
2012 ◽  
Vol 485 (7397) ◽  
pp. 242-245 ◽  
Author(s):  
Benjamin M. Neale ◽  
Yan Kou ◽  
Li Liu ◽  
Avi Ma’ayan ◽  
Kaitlin E. Samocha ◽  
...  

2012 ◽  
Vol 44 (4) ◽  
pp. 471-471 ◽  
Author(s):  
Brian J O'Roak ◽  
Pelagia Deriziotis ◽  
Choli Lee ◽  
Laura Vives ◽  
Jerrod J Schwartz ◽  
...  

2017 ◽  
Author(s):  
Ye Zhang ◽  
Shi Huang

AbstractThe genetic basis of autism spectrum disorders (ASD) remains better understood and might concern only a small fraction of the genome if the neutral theory were true. We here analyzed published de novo mutations (DNMs) in ASD and controls. We found that DNMs in normal subjects occurred at positions bearing SNPs at least 3.45 fold more frequent than expected from the neutral theory, whereas DNMs in ASD were less frequent relative to those in controls, especially so for common SNPs with minor allele frequency >0.01. Among sites bearing both SNPs and DNMs, DNMs in controls occurred significantly more frequent than DNMs in ASD at reference allele sites bearing C or G nucleotides, indicating depletion of ASD associated DNMs in known regions of hypermutability or less functional constraints such as CpG sites. We also analyzed the nucleotide compositions of DNMs and the parity (1:1 ratio) of pyrimidines and purines. We found that DNMs in ASD showed overall lower AT content than that in controls. Parity violations and AT bias in DNMs occurred at expected frequency based on chance in both ASD and controls. These results show enrichment of DNMs at positions bearing SNP sites and C or G sites in normal subjects and less so in ASD, which is not expected from the neutral model, and indicate that DNMs are on average more deleterious in ASD than in controls.


2011 ◽  
Vol 43 (6) ◽  
pp. 585-589 ◽  
Author(s):  
Brian J O'Roak ◽  
Pelagia Deriziotis ◽  
Choli Lee ◽  
Laura Vives ◽  
Jerrod J Schwartz ◽  
...  

2014 ◽  
Vol 15 (2) ◽  
pp. 133-141 ◽  
Author(s):  
Michael Ronemus ◽  
Ivan Iossifov ◽  
Dan Levy ◽  
Michael Wigler

2020 ◽  
Vol 11 (1) ◽  
pp. 33
Author(s):  
Kang Wang ◽  
Weicheng Duan ◽  
Yijie Duan ◽  
Yuxin Yu ◽  
Xiuyi Chen ◽  
...  

Autism spectrum disorder (ASD) cases have increased rapidly in recent decades, which is associated with various genetic abnormalities. To provide a better understanding of the genetic factors in ASD, we assessed the global scientific output of the related studies. A total of 2944 studies published between 1997 and 2018 were included by systematic retrieval from the Web of Science (WoS) database, whose scientific landscapes were drawn and the tendencies and research frontiers were explored through bibliometric methods. The United States has been acting as a leading explorer of the field worldwide in recent years. The rapid development of high-throughput technologies and bioinformatics transferred the research method from the traditional classic method to a big data-based pipeline. As a consequence, the focused research area and tendency were also changed, as the contribution of de novo mutations in ASD has been a research hotspot in the past several years and probably will remain one into the near future, which is consistent with the current opinions of the major etiology of ASD. Therefore, more attention and financial support should be paid to the deciphering of the de novo mutations in ASD. Meanwhile, the effective cooperation of multi-research centers and scientists in different fields should be advocated in the next step of scientific research undertaken.


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