scholarly journals RCSB Protein Data Bank: Sustaining A Living Digital Data Resource That Enables Breakthroughs In Scientific Research And Biomedical Education

2018 ◽  
Vol 32 (S1) ◽  
Author(s):  
Stephen K. Burley ◽  
Helen M. Berman ◽  
Cole Christie ◽  
Jose M. Duarte ◽  
Zukang Feng ◽  
...  
2017 ◽  
Vol 27 (1) ◽  
pp. 316-330 ◽  
Author(s):  
Stephen K. Burley ◽  
Helen M. Berman ◽  
Cole Christie ◽  
Jose M. Duarte ◽  
Zukang Feng ◽  
...  

2018 ◽  
Vol 74 (a1) ◽  
pp. a118-a118
Author(s):  
Christine Zardecki ◽  
Helen M. Berman ◽  
Cole Christie ◽  
Jose M. Duarte ◽  
Zukang Feng ◽  
...  

IUCrJ ◽  
2020 ◽  
Vol 7 (4) ◽  
pp. 630-638 ◽  
Author(s):  
Helen M. Berman ◽  
Brinda Vallat ◽  
Catherine L. Lawson

The Protein Data Bank (PDB) has grown from a small data resource for crystallographers to a worldwide resource serving structural biology. The history of the growth of the PDB and the role that the community has played in developing standards and policies are described. This article also illustrates how other biophysics communities are collaborating with the worldwide PDB to create a network of interoperating data resources. This network will expand the capabilities of structural biology and enable the determination and archiving of increasingly complex structures.


2014 ◽  
Vol 28 (10) ◽  
pp. 1009-1014 ◽  
Author(s):  
Helen M. Berman ◽  
Gerard J. Kleywegt ◽  
Haruki Nakamura ◽  
John L. Markley

Abstract The Research Collaboratory for Structural Bioinformatics Protein Data Bank (RSCB PDB) provides a wide range of digital data regarding biology and biomedicine. This huge internet resource involves a wide range of important biological data, obtained from experiments around the globe by different scientists. The Worldwide Protein Data Bank (wwPDB) represents a brilliant collection of 3D structure data associated with important and vital biomolecules including nucleic acids (RNAs and DNAs) and proteins. Moreover, this database accumulates knowledge regarding function and evolution of biomacromolecules which supports different disciplines such as biotechnology. 3D structure, functional characteristics and phylogenetic properties of biomacromolecules give a deep understanding of the biomolecules’ characteristics. An important advantage of the wwPDB database is the data updating time, which is done every week. This updating process helps users to have the newest data and information for their projects. The data and information in wwPDB can be a great support to have an accurate imagination and illustrations of the biomacromolecules in biotechnology. As demonstrated by the SARS-CoV-2 pandemic, rapidly reliable and accessible biological data for microbiology, immunology, vaccinology, and drug development are critical to address many healthcare-related challenges that are facing humanity. The aim of this paper is to introduce the readers to wwPDB, and to highlight the importance of this database in biotechnology, with the expectation that the number of scientists interested in the utilization of Protein Data Bank’s resources will increase substantially in the coming years.


2002 ◽  
Vol 58 (s1) ◽  
pp. c214-c214
Author(s):  
W. F. Bluhm ◽  
T. Battistuz ◽  
E. Clingman ◽  
N. Deshpande ◽  
W. Fleri ◽  
...  

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