Detecting functional modules in dynamic protein-protein interaction networks using Markov Clustering and Firefly Algorithm

2014 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) ◽

10.1109/bibm.2014.6999131 ◽

2014 ◽

Author(s):

Xiujuan Lei ◽

Fang-Xiang Wu ◽

Fei Wang ◽

Aidong Zhang

Keyword(s):

Protein Interaction ◽

Firefly Algorithm ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Functional Modules ◽

Protein Protein Interaction ◽

Markov Clustering ◽

Protein Protein Interaction Networks

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Protein complex identification through Markov clustering with firefly algorithm on dynamic protein–protein interaction networks

Information Sciences ◽

10.1016/j.ins.2015.09.028 ◽

2016 ◽

Vol 329 ◽

pp. 303-316 ◽

Author(s):

Xiujuan Lei ◽

Fei Wang ◽

Fang-Xiang Wu ◽

Aidong Zhang ◽

Witold Pedrycz

Keyword(s):

Protein Interaction ◽

Protein Complex ◽

Firefly Algorithm ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Protein Protein Interaction ◽

Markov Clustering ◽

Protein Protein Interaction Networks

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Functional Modules in Protein–Protein Interaction Networks

Systems Biology for Signaling Networks - Systems Biology ◽

10.1007/978-1-4419-5797-9_14 ◽

2010 ◽

pp. 353-369

Author(s):

Tobias Müller ◽

Marcus Dittrich

Keyword(s):

Protein Interaction ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Functional Modules ◽

Protein Protein Interaction ◽

Protein Protein Interaction Networks

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Identification of Essential Protein based on Functional Modules and Weighted Protein-Protein Interaction Networks

International Journal of u- and e- Service Science and Technology ◽

10.14257/ijunesst.2016.9.8.29 ◽

2016 ◽

Vol 9 (8) ◽

pp. 343-350 ◽

Author(s):

Yi Pan ◽

Sai Hu ◽

Bihai Zhao

Keyword(s):

Protein Interaction ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Functional Modules ◽

Essential Protein ◽

Protein Protein Interaction ◽

Protein Protein Interaction Networks

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Dynamic identifying protein functional modules based on adaptive density modularity in protein-protein interaction networks

BMC Bioinformatics ◽

10.1186/1471-2105-16-s12-s5 ◽

2015 ◽

Vol 16 (S12) ◽

Author(s):

Xianjun Shen ◽

Li Yi ◽

Yang Yi ◽

Jincai Yang ◽

Tingting He ◽

...

Keyword(s):

Protein Interaction ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Functional Modules ◽

Protein Protein Interaction ◽

Protein Protein Interaction Networks

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An improved AP algorithm for identifying overlapping functional modules in protein-protein interaction networks

IEEE 10th INTERNATIONAL CONFERENCE ON SIGNAL PROCESSING PROCEEDINGS ◽

10.1109/icosp.2010.5656663 ◽

2010 ◽

Author(s):

Yu Wang ◽

Lin Gao

Keyword(s):

Protein Interaction ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Functional Modules ◽

Protein Protein Interaction ◽

Protein Protein Interaction Networks

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Integrative Approach for Detection of Functional Modules from Protein-Protein Interaction Networks

Protein-Protein Interactions - Computational and Experimental Tools ◽

10.5772/37858 ◽

2012 ◽

Author(s):

Zelmina Lubovac

Keyword(s):

Protein Interaction ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Integrative Approach ◽

Functional Modules ◽

Protein Protein Interaction ◽

Protein Protein Interaction Networks

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Research on Algorithms for Complexes and Functional Modules Prediction in Protein-Protein Interaction Networks

Chinese Journal of Computers ◽

10.3724/sp.j.1016.2011.01239 ◽

2011 ◽

Vol 34 (7) ◽

pp. 1239-1251 ◽

Author(s):

Liang YU ◽

Lin GAO ◽

Peng-Gang SUN

Keyword(s):

Protein Interaction ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Functional Modules ◽

Protein Protein Interaction ◽

Protein Protein Interaction Networks

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Erratum to: Functional Modules in Protein–Protein Interaction Networks

Systems Biology for Signaling Networks - Systems Biology ◽

10.1007/978-1-4419-5797-9_35 ◽

2010 ◽

pp. E1-E1

Author(s):

Tobias Müller ◽

Marcus Dittrich

Keyword(s):

Protein Interaction ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Functional Modules ◽

Protein Protein Interaction ◽

Protein Protein Interaction Networks

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Dynamic protein–protein interaction networks construction using firefly algorithm

Pattern Analysis and Applications ◽

10.1007/s10044-017-0626-7 ◽

2017 ◽

Vol 21 (4) ◽

pp. 1067-1081 ◽

Author(s):

Moslem Mohammadi Jenghara ◽

Hossein Ebrahimpour-Komleh ◽

Hamid Parvin

Keyword(s):

Protein Interaction ◽

Firefly Algorithm ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Protein Protein Interaction ◽

Protein Protein Interaction Networks

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Improved Ant Colony Optimization for Detecting Functional Modules in Protein-Protein Interaction Networks

Communications in Computer and Information Science - Information Computing and Applications ◽

10.1007/978-3-642-34041-3_57 ◽

2012 ◽

pp. 404-413 ◽

Author(s):

Junzhong Ji ◽

Zhijun Liu ◽

Aidong Zhang ◽

Lang Jiao ◽

Chunnian Liu

Keyword(s):

Ant Colony Optimization ◽

Protein Interaction ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Functional Modules ◽

Protein Protein Interaction ◽

Protein Protein Interaction Networks

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