Protein complex identification through Markov clustering with firefly algorithm on dynamic protein–protein interaction networks

Interaction Networks ◽

Markov Clustering ◽

Detecting functional modules in dynamic protein-protein interaction networks using Markov Clustering and Firefly Algorithm

2014 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) ◽

10.1109/bibm.2014.6999131 ◽

2014 ◽

Author(s):

Xiujuan Lei ◽

Fang-Xiang Wu ◽

Fei Wang ◽

Aidong Zhang

Keyword(s):

Protein Interaction ◽

Firefly Algorithm ◽

Interaction Networks ◽

Functional Modules ◽

Markov Clustering ◽

Pepper: cytoscape app for protein complex expansion using protein–protein interaction networks

Bioinformatics ◽

10.1093/bioinformatics/btu517 ◽

2014 ◽

Vol 30 (23) ◽

pp. 3419-3420 ◽

Cited By ~ 5

Author(s):

C. Winterhalter ◽

R. Nicolle ◽

A. Louis ◽

C. To ◽

F. Radvanyi ◽

...

Keyword(s):

Protein Interaction ◽

Protein Complex ◽

Interaction Networks ◽

Dynamic protein–protein interaction networks construction using firefly algorithm

Pattern Analysis and Applications ◽

10.1007/s10044-017-0626-7 ◽

2017 ◽

Vol 21 (4) ◽

pp. 1067-1081 ◽

Cited By ~ 11

Author(s):

Moslem Mohammadi Jenghara ◽

Hossein Ebrahimpour-Komleh ◽

Hamid Parvin

Keyword(s):

Protein Interaction ◽

Firefly Algorithm ◽

Interaction Networks ◽

Protein Complex Prediction in Large Ontology Attributed Protein-Protein Interaction Networks

IEEE/ACM Transactions on Computational Biology and Bioinformatics ◽

10.1109/tcbb.2013.86 ◽

2013 ◽

Vol 10 (3) ◽

pp. 729-741 ◽

Cited By ~ 31

Author(s):

Yijia Zhang ◽

Hongfei Lin ◽

Zhihao Yang ◽

Jian Wang ◽

Yanpeng Li ◽

...

Keyword(s):

Protein Interaction ◽

Protein Complex ◽

Interaction Networks ◽

Protein Complex Prediction ◽

A Markov Clustering Based Link Clustering Method to Identify Overlapping Modules in Protein-Protein Interaction Networks

Current Bioinformatics ◽

10.2174/1574893611666160125222017 ◽

2016 ◽

Vol 11 (2) ◽

pp. 221-233

Author(s):

Yan Wang ◽

Guishen Wang ◽

Di Meng ◽

Lan Huang ◽

Enrico Blanzieri ◽

...

Keyword(s):

Protein Interaction ◽

Interaction Networks ◽

Clustering Method ◽

Markov Clustering ◽

Inferring protein-protein interaction networks from protein complex data

International Journal of Bioinformatics Research and Applications ◽

10.1504/ijbra.2007.015416 ◽

2007 ◽

Vol 3 (4) ◽

pp. 480 ◽

Cited By ~ 2

Author(s):

Shawn Martin ◽

Zisu Mao ◽

Linda S. Chan ◽

Suraiya Rasheed

Keyword(s):

Protein Interaction ◽

Protein Complex ◽

Interaction Networks ◽

Complex Data ◽

Protein complex forming ability is favored over the features of interacting partners in determining the evolutionary rates of proteins in the yeast protein-protein interaction networks

BMC Systems Biology ◽

10.1186/1752-0509-4-155 ◽

2010 ◽

Vol 4 (1) ◽

pp. 155 ◽

Cited By ~ 9

Author(s):

Sandip Chakraborty ◽

Bratati Kahali ◽

Tapash C Ghosh

Keyword(s):

Protein Interaction ◽

Protein Complex ◽

Evolutionary Rates ◽

Interaction Networks ◽

Yeast Protein ◽

Protein complex prediction for large protein protein interaction networks with the Core&Peel method

BMC Bioinformatics ◽

10.1186/s12859-016-1191-6 ◽

2016 ◽

Vol 17 (S12) ◽

Cited By ~ 17

Author(s):

Marco Pellegrini ◽

Miriam Baglioni ◽

Filippo Geraci

Keyword(s):

Protein Interaction ◽

Protein Complex ◽

Interaction Networks ◽

Large Protein ◽

The Core ◽

Protein Complex Prediction ◽

Faculty Opinions recommendation of Modular decomposition of protein-protein interaction networks.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.1020428.232579 ◽

2004 ◽

Author(s):

Ruedi Aebersold

Keyword(s):

Protein Interaction ◽

Interaction Networks ◽

Modular Decomposition ◽

Faculty Opinions recommendation of Integrating protein-protein interaction networks with phenotypes reveals signs of interactions.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.718178553.793487291 ◽

2013 ◽

Author(s):

Marc Therrien ◽

Dariel Ashton-Beaucage

Keyword(s):

Protein Interaction ◽

Interaction Networks ◽