Fully Automatic Registration of 3d Cat-Scan Images Using Crest Lines

Author(s):  
Thirion ◽  
Gourdon ◽  
Monga ◽  
Gueziec ◽  
Ayache
Author(s):  
Nina Montaña-Brown ◽  
João Ramalhinho ◽  
Moustafa Allam ◽  
Brian Davidson ◽  
Yipeng Hu ◽  
...  

Abstract Purpose: Registration of Laparoscopic Ultrasound (LUS) to a pre-operative scan such as Computed Tomography (CT) using blood vessel information has been proposed as a method to enable image-guidance for laparoscopic liver resection. Currently, there are solutions for this problem that can potentially enable clinical translation by bypassing the need for a manual initialisation and tracking information. However, no reliable framework for the segmentation of vessels in 2D untracked LUS images has been presented. Methods: We propose the use of 2D UNet for the segmentation of liver vessels in 2D LUS images. We integrate these results in a previously developed registration method, and show the feasibility of a fully automatic initialisation to the LUS to CT registration problem without a tracking device. Results: We validate our segmentation using LUS data from 6 patients. We test multiple models by placing patient datasets into different combinations of training, testing and hold-out, and obtain mean Dice scores ranging from 0.543 to 0.706. Using these segmentations, we obtain registration accuracies between 6.3 and 16.6 mm in 50% of cases. Conclusions: We demonstrate the first instance of deep learning (DL) for the segmentation of liver vessels in LUS. Our results show the feasibility of UNet in detecting multiple vessel instances in 2D LUS images, and potentially automating a LUS to CT registration pipeline.


F1000Research ◽  
2020 ◽  
Vol 9 ◽  
pp. 1385
Author(s):  
Anna H. Klemm

Commercially available dot blots provide a set of specific antibodies spotted on membranes in a given pattern. If the target analyte is present in the solution that the membrane is incubated with, the detection reaction will result in a chemiluminescence signal which is recorded by film or scanner. In order to know which analytes were detected, the analysis consists of measuring the intensity of the recorded signal on each spot. Manually measuring the entire array (typically ~200 spots) is unreliable and tedious. Fully automatic registration of the blot membrane to the template pattern often fails since there might be only very few positive spots on the membrane. This article presents an ImageJ/Fiji macro that requires minimal user input to perform a robust iterative registration of an adjustable template mask representing the spot pattern to the recorded blot. Once the template mask is matched to the dot blot, the spot intensity of each dot is measured and reported in a results table.


2020 ◽  
Vol 57 (16) ◽  
pp. 161503
Author(s):  
姚国标 Yao Guobiao ◽  
满孝成 Man Xiaocheng ◽  
张传辉 Zhang Chuanhui ◽  
傅青青 Fu Qingqing ◽  
郑国强 Zheng Guoqiang ◽  
...  

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