Adjusting Local Conformational Sampling For Fragment Assembly Protein Structure Prediction Based On Secondary Structure Complexity

Structure Prediction ◽

Conformational Sampling ◽

Fragment Assembly ◽

Structure Complexity

A permissive secondary structure-guided superposition tool for clustering of protein fragments toward protein structure prediction via fragment assembly

Bioinformatics ◽

10.1093/bioinformatics/btl098 ◽

2006 ◽

Vol 22 (11) ◽

pp. 1343-1352 ◽

Cited By ~ 4

Author(s):

Gilad Wainreb ◽

Nurit Haspel ◽

Haim J. Wolfson ◽

Ruth Nussinov

Keyword(s):

Protein Structure ◽

Secondary Structure ◽

Structure Prediction ◽

Protein Fragments ◽

Protein Structure Prediction: Assembly of Secondary Structure Elements by Basin-Hopping

ChemPhysChem ◽

10.1002/cphc.201402247 ◽

2014 ◽

Vol 15 (15) ◽

pp. 3378-3390 ◽

Cited By ~ 1

Author(s):

Falk Hoffmann ◽

Ioan Vancea ◽

Sanjay G. Kamat ◽

Birgit Strodel

Keyword(s):

Protein Structure ◽

Secondary Structure ◽

Structure Prediction ◽

Basin Hopping

Advances in Protein Super-Secondary Structure Prediction and Application to Protein Structure Prediction

Methods in Molecular Biology - Protein Supersecondary Structures ◽

10.1007/978-1-4939-9161-7_2 ◽

2019 ◽

pp. 15-45 ◽

Cited By ~ 3

Author(s):

Elijah MacCarthy ◽

Derrick Perry ◽

Dukka B. KC

Keyword(s):

Protein Structure ◽

Secondary Structure ◽

Structure Prediction ◽

Secondary Structure Prediction

2019 Fourth International Conference on Advances in Computational Tools for Engineering Applications (ACTEA) ◽

SCOP-Aided Fragment Assembly Protein Structure Prediction

10.1109/actea.2019.8851070 ◽

2019 ◽

Author(s):

Jad Abbass ◽

Jean-Christophe Nebel

Keyword(s):

Protein Structure ◽

Structure Prediction ◽

Protein structure prediction based on fragment assembly and parameter optimization

Biophysical Chemistry ◽

10.1016/j.bpc.2004.12.046 ◽

2005 ◽

Vol 115 (2-3) ◽

pp. 209-214 ◽

Cited By ~ 32

Author(s):

Julian Lee ◽

Seung-Yeon Kim ◽

Jooyoung Lee

Keyword(s):

Protein Structure ◽

Parameter Optimization ◽

Structure Prediction ◽

Enhancing fragment-based protein structure prediction by customising fragment cardinality according to local secondary structure

BMC Bioinformatics ◽

10.1186/s12859-020-3491-0 ◽

2020 ◽

Vol 21 (1) ◽

Author(s):

Jad Abbass ◽

Jean-Christophe Nebel

Keyword(s):

Protein Structure ◽

Secondary Structure ◽

Structure Prediction ◽

Local Secondary Structure

Protein Structure Prediction Using the Hybrid Energy Function, Fragment Assembly and Double Optimization

Journal of the Korean Physical Society ◽

10.3938/jkps.52.143 ◽

2008 ◽

Vol 52 (1) ◽

pp. 143-151 ◽

Cited By ~ 1

Author(s):

Kwang-Hwi Cho ◽

Julian Lee ◽

Taek-Kyun Kim

Keyword(s):

Protein Structure ◽

Energy Function ◽

Structure Prediction ◽

Fragment Assembly ◽

Hybrid Energy

Reconstruction and Stability of Secondary Structure Elements in the Context of Protein Structure Prediction

Biophysical Journal ◽

10.1016/j.bpj.2009.02.057 ◽

2009 ◽

Vol 96 (11) ◽

pp. 4399-4408 ◽

Cited By ~ 5

Author(s):

Alexei A. Podtelezhnikov ◽

David L. Wild

Keyword(s):

Protein Structure ◽

Secondary Structure ◽

Structure Prediction

The dual role of fragments in fragment-assembly methods for de novo protein structure prediction

Proteins Structure Function and Bioinformatics ◽

10.1002/prot.23215 ◽

2011 ◽

Vol 80 (2) ◽

pp. 490-504 ◽

Cited By ~ 32

Author(s):

Julia Handl ◽

Joshua Knowles ◽

Robert Vernon ◽

David Baker ◽

Simon C. Lovell

Keyword(s):

Protein Structure ◽

Structure Prediction ◽

De Novo ◽

Dual Role ◽

Toward a detailed understanding of search trajectories in fragment assembly approaches to protein structure prediction

Proteins Structure Function and Bioinformatics ◽

10.1002/prot.24987 ◽

2016 ◽

Vol 84 (4) ◽

pp. 411-426 ◽

Cited By ~ 12

Author(s):

Shaun M. Kandathil ◽

Julia Handl ◽

Simon C. Lovell

Keyword(s):

Protein Structure ◽

Structure Prediction ◽

Detailed Understanding ◽

Fragment Assembly ◽

Search Trajectories