Exploring the impact of RNA editing on mitochondrial phylogenetic analyses in liverworts, an early land plant lineage

Author(s):  
Shanshan Dong ◽  
Honglei Li ◽  
Bernard Goffinet ◽  
Yang Liu
2018 ◽  
Vol 115 (10) ◽  
pp. E2274-E2283 ◽  
Author(s):  
Jennifer L. Morris ◽  
Mark N. Puttick ◽  
James W. Clark ◽  
Dianne Edwards ◽  
Paul Kenrick ◽  
...  

Establishing the timescale of early land plant evolution is essential for testing hypotheses on the coevolution of land plants and Earth’s System. The sparseness of early land plant megafossils and stratigraphic controls on their distribution make the fossil record an unreliable guide, leaving only the molecular clock. However, the application of molecular clock methodology is challenged by the current impasse in attempts to resolve the evolutionary relationships among the living bryophytes and tracheophytes. Here, we establish a timescale for early land plant evolution that integrates over topological uncertainty by exploring the impact of competing hypotheses on bryophyte−tracheophyte relationships, among other variables, on divergence time estimation. We codify 37 fossil calibrations for Viridiplantae following best practice. We apply these calibrations in a Bayesian relaxed molecular clock analysis of a phylogenomic dataset encompassing the diversity of Embryophyta and their relatives within Viridiplantae. Topology and dataset sizes have little impact on age estimates, with greater differences among alternative clock models and calibration strategies. For all analyses, a Cambrian origin of Embryophyta is recovered with highest probability. The estimated ages for crown tracheophytes range from Late Ordovician to late Silurian. This timescale implies an early establishment of terrestrial ecosystems by land plants that is in close accord with recent estimates for the origin of terrestrial animal lineages. Biogeochemical models that are constrained by the fossil record of early land plants, or attempt to explain their impact, must consider the implications of a much earlier, middle Cambrian–Early Ordovician, origin.


Nature Plants ◽  
2020 ◽  
Vol 6 (2) ◽  
pp. 107-118 ◽  
Author(s):  
Jian Zhang ◽  
Xin-Xing Fu ◽  
Rui-Qi Li ◽  
Xiang Zhao ◽  
Yang Liu ◽  
...  

2004 ◽  
Vol 58 (2) ◽  
pp. 154-162 ◽  
Author(s):  
Stefan A. Rensing ◽  
Justine Kiessling ◽  
Ralf Reski ◽  
Eva L. Decker

2001 ◽  
Vol 116 (1-2) ◽  
pp. vii
Author(s):  
Philippe Gerrienne ◽  
Christopher Berry

2010 ◽  
Vol 10 (1) ◽  
pp. 321 ◽  
Author(s):  
Kenneth G Karol ◽  
Kathiravetpillai Arumuganathan ◽  
Jeffrey L Boore ◽  
Aaron M Duffy ◽  
Karin DE Everett ◽  
...  

2006 ◽  
Vol 142 (3-4) ◽  
pp. 123-130 ◽  
Author(s):  
Philippe Gerrienne ◽  
David L. Dilcher ◽  
Sérgio Bergamaschi ◽  
Ingrid Milagres ◽  
Egberto Pereira ◽  
...  

2007 ◽  
Vol 2 (2) ◽  
pp. 125-126 ◽  
Author(s):  
Michael Krings ◽  
Thomas N. Taylor ◽  
Hagen Hass ◽  
Hans Kerp ◽  
Nora Dotzler ◽  
...  

1996 ◽  
Vol 39 (3) ◽  
pp. 209-216 ◽  
Author(s):  
Charles H. Wellman ◽  
Dianne Edwards ◽  
Lindsay Axe

2010 ◽  
Vol 97 (9) ◽  
pp. 1511-1531 ◽  
Author(s):  
A. Jonathan Shaw ◽  
Cymon J. Cox ◽  
William R. Buck ◽  
Nicolas Devos ◽  
Alex M. Buchanan ◽  
...  

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