scholarly journals Integration with an adaptive harmonic mean algorithm

2020 ◽  
Vol 35 (24) ◽  
pp. 1950142
Author(s):  
Allen Caldwell ◽  
Philipp Eller ◽  
Vasyl Hafych ◽  
Rafael Schick ◽  
Oliver Schulz ◽  
...  

Numerically estimating the integral of functions in high dimensional spaces is a nontrivial task. A oft-encountered example is the calculation of the marginal likelihood in Bayesian inference, in a context where a sampling algorithm such as a Markov Chain Monte Carlo provides samples of the function. We present an Adaptive Harmonic Mean Integration (AHMI) algorithm. Given samples drawn according to a probability distribution proportional to the function, the algorithm will estimate the integral of the function and the uncertainty of the estimate by applying a harmonic mean estimator to adaptively chosen regions of the parameter space. We describe the algorithm and its mathematical properties, and report the results using it on multiple test cases.

2013 ◽  
Vol 9 (S298) ◽  
pp. 441-441
Author(s):  
Yihan Song ◽  
Ali Luo ◽  
Yongheng Zhao

AbstractStellar radial velocity is estimated by using template fitting and Markov Chain Monte Carlo(MCMC) methods. This method works on the LAMOST stellar spectra. The MCMC simulation generates a probability distribution of the RV. The RV error can also computed from distribution.


2019 ◽  
Author(s):  
Richard Scalzo ◽  
David Kohn ◽  
Hugo Olierook ◽  
Gregory Houseman ◽  
Rohitash Chandra ◽  
...  

Abstract. The rigorous quantification of uncertainty in geophysical inversions is a challenging problem. Inversions are often ill-posed and the likelihood surface may be multimodal; properties of any single mode become inadequate uncertainty measures, and sampling methods become inefficient for irregular posteriors or high-dimensional parameter spaces. We explore the influences of different choices made by the practitioner on the efficiency and accuracy of Bayesian geophysical inversion methods that rely on Markov chain Monte Carlo sampling to assess uncertainty, using a multi-sensor inversion of the three-dimensional structure and composition of a region in the Cooper Basin of South Australia as a case study. The inversion is performed using an updated version of the Obsidian distributed inversion software. We find that the posterior for this inversion has complex local covariance structure, hindering the efficiency of adaptive sampling methods that adjust the proposal based on the chain history. Within the context of a parallel-tempered Markov chain Monte Carlo scheme for exploring high-dimensional multi-modal posteriors, a preconditioned Crank-Nicholson proposal outperforms more conventional forms of random walk. Aspects of the problem setup, such as priors on petrophysics or on 3-D geological structure, affect the shape and separation of posterior modes, influencing sampling performance as well as the inversion results. Use of uninformative priors on sensor noise can improve inversion results by enabling optimal weighting among multiple sensors even if noise levels are uncertain. Efficiency could be further increased by using posterior gradient information within proposals, which Obsidian does not currently support, but which could be emulated using posterior surrogates.


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