Inference of Nonlinear ODE-Based Gene Regulatory Networks via Intrinsically Bayesian Robust Kalman Filtering

Proceedings of the 7th ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics - BCB '16 ◽

10.1145/2975167.2985681 ◽

2016 ◽

Author(s):

Roozbeh Dehghannasiri ◽

Mohammad Shahrokh Esfahani ◽

Edward R. Dougherty

Keyword(s):

Gene Regulatory Networks ◽

Kalman Filtering ◽

Regulatory Networks ◽

Gene Regulatory ◽

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An adaptive extended Kalman filtering approach to nonlinear dynamic gene regulatory networks via short gene expression time series

Communications Faculty Of Science University of Ankara Series A1Mathematics and Statistics ◽

10.31801/cfsuasmas.749624 ◽

2020 ◽

Vol 69 (2) ◽

pp. 211-220

Author(s):

Levent ÖZBEK

Keyword(s):

Gene Expression ◽

Time Series ◽

Gene Regulatory Networks ◽

Kalman Filtering ◽

Regulatory Networks ◽

Extended Kalman Filtering ◽

Gene Expression Time Series ◽

Gene Regulatory ◽

Expression Time ◽

Filtering Approach

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INFERENCE OF GENE REGULATORY NETWORKS BY EXTENDED KALMAN FILTERING USING GENE EXPRESSION TIME SERIES DATA

Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms ◽

10.5220/0003754801500155 ◽

2012 ◽

Keyword(s):

Gene Expression ◽

Gene Regulatory Networks ◽

Kalman Filtering ◽

Regulatory Networks ◽

Time Series Data ◽

Series Data ◽

Extended Kalman Filtering ◽

Gene Expression Time Series ◽

Gene Regulatory ◽

Expression Time

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An Extended Kalman Filtering Approach to Modeling Nonlinear Dynamic Gene Regulatory Networks via Short Gene Expression Time Series

IEEE/ACM Transactions on Computational Biology and Bioinformatics ◽

10.1109/tcbb.2009.5 ◽

2009 ◽

Vol 6 (3) ◽

pp. 410-419 ◽

Author(s):

Zidong Wang ◽

Xiaohui Liu ◽

Yurong Liu ◽

Jinling Liang ◽

V. Vinciotti

Keyword(s):

Gene Expression ◽

Time Series ◽

Gene Regulatory Networks ◽

Kalman Filtering ◽

Regulatory Networks ◽

Extended Kalman Filtering ◽

Gene Expression Time Series ◽

Gene Regulatory ◽

Expression Time ◽

Filtering Approach

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Inference of Noisy Nonlinear Differential Equation Models for Gene Regulatory Networks Using Genetic Programming and Kalman Filtering

IEEE Transactions on Signal Processing ◽

10.1109/tsp.2008.919638 ◽

2008 ◽

Vol 56 (7) ◽

pp. 3327-3339 ◽

Author(s):

Lijun Qian ◽

Haixin Wang ◽

E.R. Dougherty

Keyword(s):

Differential Equation ◽

Genetic Programming ◽

Nonlinear Differential Equation ◽

Gene Regulatory Networks ◽

Kalman Filtering ◽

Regulatory Networks ◽

Differential Equation Models ◽

Gene Regulatory

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Guaranteed Cost Control for Uncertain Gene Regulatory Networks with Interval Time-Varying Discrete Delays and Constant Distributed Delays

2020 39th Chinese Control Conference (CCC) ◽

10.23919/ccc50068.2020.9189156 ◽

2020 ◽

Author(s):

Zhiwei Zhang ◽

Heng Liu ◽

Xinyue Zhang ◽

Yantao Wang ◽

Xian Zhang

Keyword(s):

Gene Regulatory Networks ◽

Regulatory Networks ◽

Cost Control ◽

Guaranteed Cost Control ◽

Distributed Delays ◽

Time Varying ◽

Interval Time ◽

Guaranteed Cost ◽

Discrete Delays ◽

Gene Regulatory

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Gene regulatory networks

Physics Subject Headings (PhySH) ◽

10.29172/b42c75b9b89345c3bf012539026851d0 ◽

2018 ◽

Keyword(s):

Gene Regulatory Networks ◽

Regulatory Networks ◽

Gene Regulatory

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Faculty Opinions recommendation of A common set of gene regulatory networks links metabolism and growth inhibition.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.1019244.254628 ◽

2004 ◽

Author(s):

Cheng-Ming Chiang

Keyword(s):

Growth Inhibition ◽

Gene Regulatory Networks ◽

Regulatory Networks ◽

Gene Regulatory

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Faculty Opinions recommendation of Evolution of evolvability in gene regulatory networks.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.1118830.574921 ◽

2008 ◽

Author(s):

Panayiotis Benos

Keyword(s):

Gene Regulatory Networks ◽

Regulatory Networks ◽

Gene Regulatory

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Faculty Opinions recommendation of Comparing different ODE modelling approaches for gene regulatory networks.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.1168106.630230 ◽

2009 ◽

Author(s):

Philip Maini ◽

Alexander Fletcher

Keyword(s):

Gene Regulatory Networks ◽

Regulatory Networks ◽

Gene Regulatory ◽

Modelling Approaches

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Faculty Opinions recommendation of How difficult is inference of mammalian causal gene regulatory networks?

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.725223355.793502741 ◽

2015 ◽

Author(s):

Mark Ragan

Keyword(s):

Gene Regulatory Networks ◽

Regulatory Networks ◽

Causal Gene ◽

Gene Regulatory

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