Refined-Graph Regularization-Based Nonnegative Matrix Factorization

2017 ◽  
Vol 9 (1) ◽  
pp. 1-21 ◽  
Author(s):  
Xuelong Li ◽  
Guosheng Cui ◽  
Yongsheng Dong
2021 ◽  
Vol 19 (2) ◽  
pp. 2147-2178
Author(s):  
Qing Yang ◽  
◽  
Jun Chen ◽  
Najla Al-Nabhan ◽  

<abstract> <p>As a popular data representation technique, Nonnegative matrix factorization (NMF) has been widely applied in edge computing, information retrieval and pattern recognition. Although it can learn parts-based data representations, existing NMF-based algorithms fail to integrate local and global structures of data to steer matrix factorization. Meanwhile, semi-supervised ones ignore the important role of instances from different classes in learning the representation. To solve such an issue, we propose a novel semi-supervised NMF approach via joint graph regularization and constraint propagation for edge computing, called robust constrained nonnegative matrix factorization (RCNMF), which learns robust discriminative representations by leveraging the power of both L2, 1-norm NMF and constraint propagation. Specifically, RCNMF explicitly exploits global and local structures of data to make latent representations of instances involved by the same class closer and those of instances involved by different classes farther. Furthermore, RCNMF introduces the L2, 1-norm cost function for addressing the problems of noise and outliers. Moreover, L2, 1-norm constraints on the factorial matrix are used to ensure the new representation sparse in rows. Finally, we exploit an optimization algorithm to solve the proposed framework. The convergence of such an optimization algorithm has been proven theoretically and empirically. Empirical experiments show that the proposed RCNMF is superior to other state-of-the-art algorithms.</p> </abstract>


Complexity ◽  
2020 ◽  
Vol 2020 ◽  
pp. 1-10
Author(s):  
Ling-Yun Dai ◽  
Rong Zhu ◽  
Juan Wang

The explosion of multiomics data poses new challenges to existing data mining methods. Joint analysis of multiomics data can make the best of the complementary information that is provided by different types of data. Therefore, they can more accurately explore the biological mechanism of diseases. In this article, two forms of joint nonnegative matrix factorization based on the sparse and graph Laplacian regularization (SG-jNMF) method are proposed. In the method, the graph regularization constraint can preserve the local geometric structure of data. L 2,1 -norm regularization can enhance the sparsity among the rows and remove redundant features in the data. First, SG-jNMF1 projects multiomics data into a common subspace and applies the multiomics fusion characteristic matrix to mine the important information closely related to diseases. Second, multiomics data of the same disease are mapped into the common sample space by SG-jNMF2, and the cluster structures are detected clearly. Experimental results show that SG-jNMF can achieve significant improvement in sample clustering compared with existing joint analysis frameworks. SG-jNMF also effectively integrates multiomics data to identify co-differentially expressed genes (Co-DEGs). SG-jNMF provides an efficient integrative analysis method for mining the biological information hidden in heterogeneous multiomics data.


2020 ◽  
Vol 29 (1) ◽  
pp. 122-131
Author(s):  
Wei Jiang ◽  
Tingting Ma ◽  
Xiaoting Feng ◽  
Yun Zhai ◽  
Kewei Tang ◽  
...  

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