Improved Genetic Algorithm-Particle Swarm Optimization Based on Multiple Populations for 3D Protein Structure Prediction

2015 ◽  
Vol 12 (7) ◽  
pp. 1414-1419
Author(s):  
Tianyu Hu ◽  
Mandong Hu ◽  
Ling Lv ◽  
Changjun Zhou
2012 ◽  
Vol 605-607 ◽  
pp. 2497-2501
Author(s):  
Shi Gang Wang ◽  
Feng Juan Wang ◽  
Shu Feng Jiang ◽  
Hong Jun Zhang

Protein structure prediction occupies an important position on bioinformatics science. In this paper, basic theory of particle swarm optimization and some theory models of protein folding study are introduced. Using modified particle swarm optimization, the protein structure prediction is predicted, and good performance of algorithm is verified by testing results of Fibonacci sequence. In the end, the future on protein structure prediction solving by particle swarm optimization is prospected.


2019 ◽  
Vol 2019 ◽  
pp. 1-13 ◽  
Author(s):  
Bo Yang

In this paper, an improved genetic algorithm with dynamic weight vector (IGA-DWV) is proposed for the pattern synthesis of a linear array. To maintain the diversity of the selected solution in each generation, the objective function space is divided by the dynamic weight vector, which is uniformly distributed on the Pareto front (PF). The individuals closer to the dynamic weight vector can be chosen to the new population. Binary- and real-coded genetic algorithms (GAs) with a mapping method are implemented for different optimization problems. To reduce the computation complexity, the repeat calculation of the fitness function in each generation is replaced by a precomputed discrete cosine transform matrix. By transforming the array pattern synthesis into a multiobjective optimization problem, the conflict among the side lobe level (SLL), directivity, and nulls can be efficiently addressed. The proposed method is compared with real number particle swarm optimization (RNPSO) and quantized particle swarm optimization (QPSO) as applied in the pattern synthesis of a linear thinned array and a digital phased array. The numerical examples show that IGA-DWV can achieve a high performance with a lower SLL and more accurate nulls.


Sign in / Sign up

Export Citation Format

Share Document