Reverse engineering gene regulatory network from microarray data using linear time-variant model

Mitra Kabir; Nasimul Noman; Hitoshi Iba

doi:10.1186/1471-2105-11-s1-s56

Reverse engineering gene regulatory network from microarray data using linear time-variant model

BMC Bioinformatics ◽

10.1186/1471-2105-11-s1-s56 ◽

2010 ◽

Vol 11 (S1) ◽

Cited By ~ 50

Author(s):

Mitra Kabir ◽

Nasimul Noman ◽

Hitoshi Iba

Keyword(s):

Reverse Engineering ◽

Gene Regulatory Network ◽

Microarray Data ◽

Regulatory Network ◽

Linear Time ◽

Gene Regulatory

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A Comparison Study of Reverse Engineering Gene Regulatory Network Modeling

2016 IEEE 16th International Conference on Bioinformatics and Bioengineering (BIBE) ◽

10.1109/bibe.2016.73 ◽

2016 ◽

Author(s):

Charles C. N. Wang ◽

Pei-Chun Chang ◽

Phillip C. Y. Sheu ◽

Jeffrey J. P. Tsai

Keyword(s):

Reverse Engineering ◽

Gene Regulatory Network ◽

Regulatory Network ◽

Network Modeling ◽

Comparison Study ◽

Gene Regulatory

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Reverse Engineering: Gene Regulatory Network Construction and Its Behavior

Computational Systems Bioinformatics — Methods and Biomedical Applications ◽

10.1142/9789812790743_0010 ◽

2008 ◽

pp. 219-250

Keyword(s):

Reverse Engineering ◽

Gene Regulatory Network ◽

Regulatory Network ◽

Network Construction ◽

Gene Regulatory

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Gene regulatory network from microarray data using dynamic neural fuzzy approach

Proceedings of the International Symposium on Biocomputing - ISB '10 ◽

10.1145/1722024.1722044 ◽

2010 ◽

Cited By ~ 1

Author(s):

S. Vineetha ◽

C. Chandra Shekara Bhat ◽

Sumam Mary Idicula

Keyword(s):

Gene Regulatory Network ◽

Microarray Data ◽

Regulatory Network ◽

Fuzzy Approach ◽

Gene Regulatory ◽

Neural Fuzzy

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Evaluation of Time Series Microarray Data for Dynamic Gene Regulatory Network Inference

XIV Mediterranean Conference on Medical and Biological Engineering and Computing 2016 - IFMBE Proceedings ◽

10.1007/978-3-319-32703-7_110 ◽

2016 ◽

pp. 565-568

Author(s):

Panagiotis Xenitidis ◽

I. Seimenis ◽

S. Kakolyris ◽

A. Adamopoulos

Keyword(s):

Time Series ◽

Gene Regulatory Network ◽

Microarray Data ◽

Regulatory Network ◽

Network Inference ◽

Gene Regulatory Network Inference ◽

Gene Regulatory ◽

Time Series Microarray

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A New Evolutionary Gene Regulatory Network Reverse Engineering Tool

Evolutionary Computation, Machine Learning and Data Mining in Bioinformatics - Lecture Notes in Computer Science ◽

10.1007/978-3-642-20389-3_2 ◽

2011 ◽

pp. 13-24 ◽

Cited By ~ 2

Author(s):

Antonella Farinaccio ◽

Leonardo Vanneschi ◽

Paolo Provero ◽

Giancarlo Mauri ◽

Mario Giacobini

Keyword(s):

Reverse Engineering ◽

Gene Regulatory Network ◽

Regulatory Network ◽

Gene Regulatory

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Efficient Reverse-Engineering of a Developmental Gene Regulatory Network

PLoS Computational Biology ◽

10.1371/journal.pcbi.1002589 ◽

2012 ◽

Vol 8 (7) ◽

pp. e1002589 ◽

Cited By ~ 65

Author(s):

Anton Crombach ◽

Karl R. Wotton ◽

Damjan Cicin-Sain ◽

Maksat Ashyraliyev ◽

Johannes Jaeger

Keyword(s):

Reverse Engineering ◽

Gene Regulatory Network ◽

Regulatory Network ◽

Developmental Gene ◽

Gene Regulatory

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Network decomposition based large-scale reverse engineering of gene regulatory network

Neurocomputing ◽

10.1016/j.neucom.2015.02.020 ◽

2015 ◽

Vol 160 ◽

pp. 213-227 ◽

Cited By ~ 7

Author(s):

Ahsan Raja Chowdhury ◽

Madhu Chetty

Keyword(s):

Reverse Engineering ◽

Gene Regulatory Network ◽

Regulatory Network ◽

Large Scale ◽

Network Decomposition ◽

Gene Regulatory

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Gene regulatory network from microarray data of colon cancer patients using TSK-type recurrent neural fuzzy network

Gene ◽

10.1016/j.gene.2012.06.042 ◽

2012 ◽

Vol 506 (2) ◽

pp. 408-416 ◽

Cited By ~ 10

Author(s):

S. Vineetha ◽

C. Chandra Shekara Bhat ◽

Sumam Mary Idicula

Keyword(s):

Colon Cancer ◽

Cancer Patients ◽

Gene Regulatory Network ◽

Microarray Data ◽

Regulatory Network ◽

Gene Regulatory ◽

Fuzzy Network ◽

Neural Fuzzy Network ◽

Neural Fuzzy

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Dynamic gene regulatory network analysis using Saccharomyces cerevisiae large-scale time-course microarray data

2017 IEEE International Symposium on Circuits and Systems (ISCAS) ◽

10.1109/iscas.2017.8050662 ◽

2017 ◽

Author(s):

L. Zhang ◽

H. C. Wu ◽

J. Q. Lin ◽

S. C. Chan

Keyword(s):

Saccharomyces Cerevisiae ◽

Network Analysis ◽

Gene Regulatory Network ◽

Microarray Data ◽

Regulatory Network ◽

Large Scale ◽

Time Course ◽

Gene Regulatory

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Reverse engineering highlights potential principles of large gene regulatory network design and learning

npj Systems Biology and Applications ◽

10.1038/s41540-017-0019-y ◽

2017 ◽

Vol 3 (1) ◽

Cited By ~ 4

Author(s):

Clément Carré ◽

André Mas ◽

Gabriel Krouk

Keyword(s):

Reverse Engineering ◽

Network Design ◽

Gene Regulatory Network ◽

Regulatory Network ◽

Large Gene ◽

Gene Regulatory

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