scholarly journals Protein function prediction by collective classification with explicit and implicit edges in protein-protein interaction networks

2013 ◽  
Vol 14 (S12) ◽  
Author(s):  
Wei Xiong ◽  
Hui Liu ◽  
Jihong Guan ◽  
Shuigeng Zhou
PLoS ONE ◽  
2013 ◽  
Vol 8 (10) ◽  
pp. e76339 ◽  
Author(s):  
Mengfei Cao ◽  
Hao Zhang ◽  
Jisoo Park ◽  
Noah M. Daniels ◽  
Mark E. Crovella ◽  
...  

2016 ◽  
Author(s):  
Minoo Ashtinai ◽  
Payman Nickchi ◽  
Soheil Jahangiri-Tazehkand ◽  
Abdollah Safari ◽  
Mehdi Mirzaie ◽  
...  

SummaryIMMAN is a software for reconstructing Interolog Protein Network (IPN) by integrating several Protein-protein Interaction Networks (PPIN). Users can unify different PPINs to mine conserved common network among species. IMMAN helps to retrieve IPNs with different degrees of conservation to engage for protein function prediction analysis based on protein networks.AvailabilityIMMAN is freely available at https://bioconductor.org/packages/IMMAN, http://profiles.bs.ipm.ir/softwares/IMMAN/[email protected], [email protected], [email protected] informationSupplementary data are available online.


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