scholarly journals Data model, dictionaries, and desiderata for biomolecular simulation data indexing and sharing

2014 ◽  
Vol 6 (1) ◽  
Author(s):  
Julien C Thibault ◽  
Daniel R Roe ◽  
Julio C Facelli ◽  
Thomas E Cheatham
Keyword(s):  
Data Model ◽  
Simulation Data ◽  
Data Indexing ◽  
Biomolecular Simulation

scholarly journals BioSimGrid: Grid-enabled biomolecular simulation data storage and analysis

2006 ◽  
Vol 22 (6) ◽  
pp. 657-664 ◽  
Author(s):  
Muan Hong Ng ◽  
Steven Johnston ◽  
Bing Wu ◽  
Stuart E. Murdock ◽  
Kaihsu Tai ◽  
...  
Keyword(s):  
Data Storage ◽  
Simulation Data ◽  
Biomolecular Simulation

scholarly journals iBIOMES Lite: Summarizing Biomolecular Simulation Data in Limited Settings

2014 ◽  
Vol 54 (6) ◽  
pp. 1810-1819 ◽  
Author(s):  
Julien C. Thibault ◽  
Thomas E. Cheatham ◽  
Julio C. Facelli
Keyword(s):  
Simulation Data ◽  
Biomolecular Simulation

scholarly journals iBIOMES: Managing and Sharing Biomolecular Simulation Data in a Distributed Environment

2013 ◽  
Vol 53 (3) ◽  
pp. 726-736 ◽  
Author(s):  
Julien C. Thibault ◽  
Julio C. Facelli ◽  
Thomas E. Cheatham
Keyword(s):  
Distributed Environment ◽  
Simulation Data ◽  
Biomolecular Simulation

scholarly journals Simulation Data Model Version 1.0

2012 ◽  
Author(s):  
Gerard Lemson ◽  
Herve Wozniak ◽  
Laurent Bourges ◽  
Miguel Cervino ◽  
Claudio Gheller ◽  
...  
Keyword(s):  
Data Model ◽  
Simulation Data ◽  
Model Version

scholarly journals SAVIME: A Database Management System for Simulation Data Analysis and Visualization

2019 ◽  
Author(s):  
Hermano Lustosa ◽  
Fábio Porto ◽  
Patrick Valduriez
Keyword(s):  
Data Analysis ◽  
Data Model ◽  
State Of The Art ◽  
Scientific Data ◽  
Database Management System ◽  
Preliminary Evaluation ◽  
Scientific Applications ◽  
Simulation Data ◽  
Data Ingestion ◽  
Numerical Solver

Limitations in current DBMSs prevent their wide adoption in scientific applications. In order to make scientific applications benefit from DBMS support, enabling declarative data analysis and visualization over scientific data, we present an in-memory array DBMS system called SAVIME. In this work we describe the system SAVIME, along with its data model. Our preliminary evaluation shows how SAVIME, by using a simple storage definition language (SDL) can outperform the state-of-the-art array database system, SciDB, during the process of data ingestion. We also show that is possible to use SAVIME as a storage alternative for a numerical solver without affecting its scalability.

scholarly journals Bookshelf: a simple curation system for the storage of biomolecular simulation data

Database ◽  
2010 ◽  
Vol 2010 (0) ◽  
pp. baq033-baq033 ◽  
Author(s):  
S. Vohra ◽  
B. A. Hall ◽  
D. A. Holdbrook ◽  
S. Khalid ◽  
P. C. Biggin
Keyword(s):  
Simulation Data ◽  
Biomolecular Simulation
Sign in / Sign up

Export Citation Format

Share Document