scholarly journals RDFIO: extending Semantic MediaWiki for interoperable biomedical data management

2017 ◽  
Vol 8 (1) ◽  
Author(s):  
Samuel Lampa ◽  
Egon Willighagen ◽  
Pekka Kohonen ◽  
Ali King ◽  
Denny Vrandečić ◽  
...  
2015 ◽  
Vol 2015 ◽  
pp. 1-17 ◽  
Author(s):  
KeeHyun Park ◽  
SeungHyeon Lim

In this paper, a multilayer secure biomedical data management system for managing a very large number of diverse personal health devices is proposed. The system has the following characteristics: the system supports international standard communication protocols to achieve interoperability. The system is integrated in the sense that both a PHD communication system and a remote PHD management system work together as a single system. Finally, the system proposed in this paper provides user/message authentication processes to securely transmit biomedical data measured by PHDs based on the concept of a biomedical signature. Some experiments, including the stress test, have been conducted to show that the system proposed/constructed in this study performs very well even when a very large number of PHDs are used. For a stress test, up to 1,200 threads are made to represent the same number of PHD agents. The loss ratio of the ISO/IEEE 11073 messages in the normal system is as high as 14% when 1,200 PHD agents are connected. On the other hand, no message loss occurs in the multilayered system proposed in this study, which demonstrates the superiority of the multilayered system to the normal system with regard to heavy traffic.


Author(s):  
Massimiliano Izzo ◽  
Gabriele Arnulfo ◽  
Maria Carla Piastra ◽  
Valentina Tedone ◽  
Luigi Varesio ◽  
...  

2018 ◽  
Vol 48 (5) ◽  
pp. 663-690 ◽  
Author(s):  
Niccolò Tempini ◽  
Sabina Leonelli

This paper analyses the role of information security (IS) in shaping the dissemination and re-use of biomedical data, as well as the embedding of such data in material, social and regulatory landscapes of research. We consider data management practices adopted by two UK-based data linkage infrastructures: the Secure Anonymised Information Linkage, a Welsh databank that facilitates appropriate re-use of health data derived from research and routine medical practice in the region, and the Medical and Environmental Data Mash-up Infrastructure, a project bringing together researchers to link and analyse complex meteorological, environmental and epidemiological data. Through an in-depth analysis of how data are sourced, processed and analysed in these two cases, we show that IS takes two distinct forms: epistemic IS, focused on protecting the reliability and reusability of data as they move across platforms and research contexts, and infrastructural IS, concerned with protecting data from external attacks, mishandling and use disruption. These two dimensions are intertwined and mutually constitutive, and yet are often perceived by researchers as being in tension with each other. We discuss how such tensions emerge when the two dimensions of IS are operationalized in ways that put them at cross purpose with each other, thus exemplifying the vulnerability of data management strategies to broader governance and technological regimes. We also show that whenever biomedical researchers manage to overcome the conflict, the interplay between epistemic and infrastructural IS prompts critical questions concerning data sources, formats, metadata and potential uses, resulting in an improved understanding of the wider context of research and the development of relevant resources. This informs and significantly improves the reusability of biomedical data, while encouraging exploratory analyses of secondary data sources.


2015 ◽  
Vol 13 (9) ◽  
pp. 2859-2864
Author(s):  
F.S. Ribeiro Junior ◽  
V.H.C. de Albuquerque ◽  
R.C.G. Fernandes ◽  
J.M.R.S. Tavares

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