Searching Pair Points of Triplet Periodicity Phase Shifts in the Genes of 17 Bacterial Genomes

2012 ◽  
Vol 7 (2) ◽  
pp. 461-475
Author(s):  
В.М. Пугачева ◽  
V.M. Pugacheva
Keyword(s):  
Phase Shifts ◽  
Bacterial Genomes ◽  
Triplet Periodicity

scholarly journals Study of the triplet periodicity phase shifts in genes

2010 ◽  
Vol 7 (3) ◽  
pp. 219-230 ◽  
Author(s):  
Eugene V. Korotkov ◽  
Maria A. Korotkova
Keyword(s):  
Phase Shift ◽  
Data Bank ◽  
Phase Shifts ◽  
Nucleotide Sequences ◽  
Gene Sequences ◽  
Reading Frame ◽  
Mathematical Algorithm ◽  
Number Of Genes ◽  
Definition Of ◽  
Triplet Periodicity

Abstract The definition of a phase shift of triplet periodicity (TP) is introduced. The mathematical algorithm for detection of TP phase shift of nucleotide sequences has been developed. Gene sequences from Kegg-46 data bank were analyzed with a purpose of searching genes with a phase shift of TP. The presence of a phase shift of triplet periodicity has been shown for 318329 genes (~10% from the number of genes in Kegg-46). We suppose that shifts of the TP phase may indicate the shifts of reading frame (RF) in genes. A relationship between the phase shifts of TP and the frame shifts in genes is discussed.

Natural products in complex microbiomes – Assembling multiple bacterial genomes directly through shotgun metagenomics

Planta Medica ◽  
2014 ◽  
Vol 80 (10) ◽  
Author(s):  
IJ Miller ◽  
T Weyna ◽  
C Mlot ◽  
SS Fong ◽  
K McPhail ◽  
...  
Keyword(s):  
Natural Products ◽  
Bacterial Genomes ◽  
Shotgun Metagenomics
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