2P-110 Coarse-grained molecular simulation of protein-DNA complex(The 46th Annual Meeting of the Biophysical Society of Japan)

Hiroo Kenzaki; Shoji Takada

doi:10.2142/biophys.48.s92_3

2P-110 Coarse-grained molecular simulation of protein-DNA complex(The 46th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.48.s92_3 ◽

2008 ◽

Vol 48 (supplement) ◽

pp. S92

Author(s):

Hiroo Kenzaki ◽

Shoji Takada

Keyword(s):

Annual Meeting ◽

Molecular Simulation ◽

Coarse Grained ◽

Biophysical Society ◽

Dna Complex

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2P120 Structural dynamics of tri-nucleosome studied by combination of coarse grained molecular simulation and SAXS(05A. Nucleic acid: Structure & Property,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s214_6 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S214

Author(s):

Yusuke Takagi ◽

Yuichi Kokabu ◽

Takashi Oda ◽

Hiroaki Tachiwana ◽

Hiroo Kenzaki ◽

...

Keyword(s):

Nucleic Acid ◽

Annual Meeting ◽

Molecular Simulation ◽

Structural Dynamics ◽

Coarse Grained ◽

Structure Property ◽

Nucleic Acid Structure ◽

Biophysical Society ◽

Acid Structure

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1P136 Coarse-grained simulation of protein-DNA complex : mechanical unzipping of nucleosome(Nucleic acid:Interaction & Complex formation,The 48th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.50.s43_3 ◽

2010 ◽

Vol 50 (supplement2) ◽

pp. S43

Author(s):

Hiroo Kenzaki ◽

Shoji Takada

Keyword(s):

Complex Formation ◽

Annual Meeting ◽

Coarse Grained ◽

Biophysical Society ◽

Dna Complex

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1TP5-07 Coarse-grained simulation of protein-DNA complex : dynamics of nucleosome(The 47th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.49.s38_2 ◽

2009 ◽

Vol 49 (supplement) ◽

pp. S38

Author(s):

Hiroo Kenzaki ◽

Shoji Takada

Keyword(s):

Annual Meeting ◽

Complex Dynamics ◽

Coarse Grained ◽

Biophysical Society ◽

Dna Complex

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1L1624 Coarse-grained molecular simulation study of ribosomal translocation dynamics(Molecular motor 1,The 49th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.51.s62_4 ◽

2011 ◽

Vol 51 (supplement) ◽

pp. S62

Author(s):

Naoto Hori ◽

Shoji Takada

Keyword(s):

Annual Meeting ◽

Molecular Simulation ◽

Simulation Study ◽

Molecular Motor ◽

Coarse Grained ◽

Biophysical Society

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1P-099 Coarse-grained simulation of protein-DNA complex : dynamics of nucleosome(Nucleic acid:Interaction & Complex formation, The 47th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.49.s79_3 ◽

2009 ◽

Vol 49 (supplement) ◽

pp. S79

Author(s):

Hiroo Kenzaki ◽

Shoji Takada

Keyword(s):

Complex Formation ◽

Annual Meeting ◽

Complex Dynamics ◽

Coarse Grained ◽

Biophysical Society ◽

Dna Complex

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1P-074 Sampling enhancement for all-atom simulation using coarse-grained model(The 46th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.48.s32_5 ◽

2008 ◽

Vol 48 (supplement) ◽

pp. S32

Author(s):

Hiromitsu Shimoyama ◽

Yasushige Yonezawa ◽

Haruki Nakamura

Keyword(s):

Annual Meeting ◽

Coarse Grained ◽

Coarse Grained Model ◽

Biophysical Society

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3P028 Interactions of MEK1 with ERK2 in mammalian MAPK pathway studied by coarse-grained molecular simulations(01B. Protein: Structure & Function,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s253_4 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S253

Author(s):

Ryo Kanada ◽

Shoji Takada

Keyword(s):

Protein Structure ◽

Structure Function ◽

Annual Meeting ◽

Mapk Pathway ◽

Molecular Simulations ◽

Coarse Grained ◽

Biophysical Society

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1P127 Zero-dipole summation method for evaluating electrostatic interaction in molecular simulation of biomolecular system(06.Electronic state,Poster,The 51st Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.53.s126_6 ◽

2013 ◽

Vol 53 (supplement1-2) ◽

pp. S126

Author(s):

Ikuo Fukuda ◽

Narutoshi Kamiya ◽

Haruki Nakamura

Keyword(s):

Annual Meeting ◽

Electronic State ◽

Molecular Simulation ◽

Electrostatic Interaction ◽

Summation Method ◽

Biophysical Society ◽

Biomolecular System

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1P119 How transcription factor can bypass obstacles? : Molecular simulation approaches(04. Nucleic acid binding proteins,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s160_5 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S160

Author(s):

Mami Saito ◽

Tsuyoshi Terakawa ◽

Shoji Takada

Keyword(s):

Transcription Factor ◽

Nucleic Acid ◽

Annual Meeting ◽

Molecular Simulation ◽

Binding Proteins ◽

Nucleic Acid Binding ◽

Biophysical Society ◽

Nucleic Acid Binding Proteins

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3P-182 Functionally rotating mechanism of a multidrug transporter studied by coarse-grained simulation(Biol & Artifi memb.:Dynamics,Oral Presentations,The 47th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.49.s182_1 ◽

2009 ◽

Vol 49 (supplement) ◽

pp. S182

Author(s):

Xin-Qiu Yao ◽

Hiroo Kenzaki ◽

Shoji Takada

Keyword(s):

Annual Meeting ◽

Coarse Grained ◽

Multidrug Transporter ◽

Biophysical Society ◽

Oral Presentations

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