3P042 Applications of the Hamiltonian replica-permutation molecular dynamics simulations to Aβ fragments(01B. Protein: Structure & Function,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Annual Meeting ◽

Biophysical Society ◽

3D0936 Prediction of dynamical conformation of biantennary complex-type N-glycan in water by replica-exchange molecular dynamics simulations(3D Protein: Structure & Function 2,The 49th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.51.s117_3 ◽

2011 ◽

Vol 51 (supplement) ◽

pp. S117

Author(s):

Suyong Re ◽

Naoyuki Miyashita ◽

Yoshiki Yamaguchi ◽

Yuji Sugita

Keyword(s):

Molecular Dynamics ◽

Protein Structure ◽

Structure Function ◽

Replica Exchange ◽

Complex Type ◽

3D Protein Structure ◽

Replica Exchange Molecular Dynamics ◽

Biophysical Society ◽

3G1012 Molecular modeling of Rad51 recombinase using molecular dynamics simulations(3G Protein: Structure 3,The 49th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.51.s129_3 ◽

2011 ◽

Vol 51 (supplement) ◽

pp. S129

Author(s):

Yuichi Kokabu ◽

Mitsunori Ikeguchi

Keyword(s):

Molecular Dynamics ◽

Protein Structure ◽

Molecular Modeling ◽

Annual Meeting ◽

Biophysical Society ◽

3G0936 Molecular dynamics simulations of the structures of H-ras GTP complex in solution and H-ras GDP complex in solutions(3G Protein: Structure 3,The 49th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.51.s129_1 ◽

2011 ◽

Vol 51 (supplement) ◽

pp. S129

Author(s):

Takeshi Miyakawa ◽

Ryota Morikawa ◽

Masako Takasu ◽

Hiroaki Saito ◽

Hidemi Nagao

Keyword(s):

Molecular Dynamics ◽

Protein Structure ◽

Annual Meeting ◽

Biophysical Society ◽

1B1546 Structural fluctuations of capping proteins analyzed by molecular dynamics simulations(Proteins: Structure & Function I,Oral Presentation,The 50th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.52.s22_3 ◽

2012 ◽

Vol 52 (supplement) ◽

pp. S22

Author(s):

Ryotaro Koike ◽

Shuichi Takeda ◽

Yuichiro Maeda ◽

Motonori Ota

Keyword(s):

Molecular Dynamics ◽

Structure Function ◽

Annual Meeting ◽

Oral Presentation ◽

Capping Proteins ◽

Biophysical Society ◽

Structural Fluctuations ◽

1P004 Concentration Dependence of Amyloid Peptide Assembly by Using the Molecular Dynamics Simulations(Protein: Structure,Poster,The 52th Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s141_4 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S141

Author(s):

Nishikawa Naohiro ◽

Sakae Yoshikate ◽

Okamoto Yuko

Keyword(s):

Molecular Dynamics ◽

Protein Structure ◽

Annual Meeting ◽

Concentration Dependence ◽

Amyloid Peptide ◽

Peptide Assembly ◽

Biophysical Society ◽

3P008 Analysis of hydrogen bonds between solvent water and atoms in the Hras-GTP complex by molecular dynamics simulations(01A. Protein: Structure,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s250_2 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S250

Author(s):

Miyakawa Takeshi ◽

Ryota Morikawa ◽

Masako Takasu ◽

Kimikazu Sugimori ◽

Kazutomo Kawaguchi ◽

...

Keyword(s):

Molecular Dynamics ◽

Protein Structure ◽

Hydrogen Bonds ◽

Annual Meeting ◽

Solvent Water ◽

Biophysical Society ◽

3G1112 Molecular Dynamics Simulations of cVH domain antibody inhibitor of HCV NS3 protease(3G Protein: Structure 3,The 49th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.51.s130_1 ◽

2011 ◽

Vol 51 (supplement) ◽

pp. S130

Author(s):

Masashi Iwayama ◽

Kazutomo Kawaguchi ◽

Hiroaki Saito ◽

Hidemi Nagao

Keyword(s):

Molecular Dynamics ◽

Protein Structure ◽

Annual Meeting ◽

Domain Antibody ◽

Biophysical Society ◽

Dynamics Simulations ◽

Ns3 Protease

1P242 1I1435 Analysis of the effect of water molecules on lipid bilayer dynamics in aqueous salt solutions using molecular dynamics simulations(Biol & Artifi memb.:Dynamics,Oral Presentations,The 48th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.50.s62_2 ◽

2010 ◽

Vol 50 (supplement2) ◽

pp. S62

Author(s):

Rina Kagawa ◽

Yoshinori Hirano ◽

Kenji Yasuoka ◽

Masato Yasui

Keyword(s):

Molecular Dynamics ◽

Annual Meeting ◽

Lipid Bilayer ◽

Water Molecules ◽

Salt Solutions ◽

Aqueous Salt Solutions ◽

Biophysical Society ◽

Dynamics Simulations ◽

Oral Presentations

3P314 Conformational analysis of PA-glycans by replica-exchange molecular dynamics simulations(30.Miscellaneous topics,Poster,The 51st Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.53.s264_1 ◽

2013 ◽

Vol 53 (supplement1-2) ◽

pp. S264

Author(s):

Shigehisa Watanabe ◽

Suyong Re ◽

Eiro Muneyuki ◽

Yuji Sugita

Keyword(s):

Molecular Dynamics ◽

Conformational Analysis ◽

Annual Meeting ◽

Replica Exchange ◽

Replica Exchange Molecular Dynamics ◽

Biophysical Society ◽

1P-030 Analysis of Tension Sensing Sites of E-coli Mechanosensitive Channel MscL Using Molecular Dynamics Simulations(The 46th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.48.s25_4 ◽

2008 ◽

Vol 48 (supplement) ◽

pp. S25

Author(s):

Yasuyuki Sawada ◽

Masaki Murase ◽

Masahiro Sokabe

Keyword(s):

Molecular Dynamics ◽

Annual Meeting ◽

Mechanosensitive Channel ◽

E Coli ◽

Biophysical Society ◽